Sbip037217.1
Basic Information
- Insect
- Stenoptilia bipunctidactyla
- Gene Symbol
- L
- Assembly
- GCA_944452705.1
- Location
- CALYCB010001165.1:784739-791866[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.52 72 5.4 5.8 1 23 3 25 3 25 0.97 2 17 3.1e-06 0.00043 21.8 4.5 1 23 31 53 31 53 0.99 3 17 0.0001 0.015 17.0 0.1 1 23 59 81 59 81 0.98 4 17 0.08 11 7.9 0.2 2 23 96 117 95 117 0.92 5 17 5.6 7.9e+02 2.1 0.1 9 23 148 163 144 163 0.93 6 17 0.71 1e+02 4.9 0.0 3 23 217 237 216 237 0.97 7 17 0.055 7.7 8.5 0.1 3 23 252 272 251 272 0.92 8 17 0.00038 0.054 15.2 0.6 1 23 280 303 280 303 0.94 9 17 0.027 3.7 9.4 0.1 1 23 308 331 308 331 0.92 10 17 0.0035 0.49 12.2 0.1 1 23 393 418 393 418 0.95 11 17 0.00082 0.12 14.2 0.0 2 23 473 494 472 494 0.96 12 17 0.047 6.7 8.7 0.0 1 23 502 524 502 524 0.98 13 17 6.8 9.5e+02 1.9 0.2 2 23 532 553 531 553 0.94 14 17 7.4 1e+03 1.7 0.0 3 23 561 581 560 581 0.94 15 17 0.72 1e+02 4.9 0.3 1 23 628 650 628 650 0.94 16 17 0.0008 0.11 14.2 0.1 1 20 658 677 658 680 0.96 17 17 0.094 13 7.7 0.3 1 23 687 709 687 709 0.94
Sequence Information
- Coding Sequence
- ATGCCGTTCCGCTGCGAGTTCTGCTCGCGGCTCTTCAAGCACAAGCGGTCGCGCGATCGGCACGTGAAGCTGCACACGGGTGACCGGAAGTACCGCTGTGAACATTGCGAGTCTGCCTTCTCGAGGAGTGACCACCTTAAGATCCATATGAAAACCCATGACAATCAAAAGCCCTTCCAATGCACCGTGTGCAACCGCGGCTACAACACGGCGGCGGCCCTCACAGGGCACATGCAGGGCCACAAGAGAGACAGGGACGGGCGGGAACCGGACAGGAAAAGAATCAGGTGTCTTCACTGTGGAGATGTGTATAGAAGAGCTGAGTTACAGGCTCACATGGTAAACGCGCACGGAGTAGACCCTGCTACTCTAACACCAACGAGAAGAGTAGCATCACAGCCGCCTCCAACCCTCCTCGCCTGCATCTACTGCACCCGAGACACCTTCACCAGCATCGAGCAACTCCAACTCCACGTGCGAGAGGCGCACTCCGCCTTACTCAACGGTGAAGGCATCACCGTCGACCAACCCCTACCTACAGACCTTAGCAAACGGGGCACTGAAGAAAGTCCACCGCTAAAGAAGGCCAAGCGTCCTGCATCAGGATCCGCCACACCGCAAACTTCCTTATCTCCCAGTACACTACTCTGTAACCAATGCAATGCTGCTTTACCAGATTTTGAAGCTTTTAGAGCACATGTGAAAGCACATTTAGAAGAAGGCAGTGATCTGAAGCGGTCAAGTCCAGCGCCTTGTTTGCATTGTGGAACGGTTTTTGCTGATGCGGCTATGTCCGAGAGACATCTTTCAGCGCATTACTTAGCCATGTCCTGTGAATATTCTTGCCACAGTTGTGCAAGAAGTTTCTCGGCTCCTGATGATTTGCAGAAGCATCTCCTAGATTTACACGCTCATCATCTGTACCGATGTTCACTATGTAAGGAGATTTTCGATTCGAAAGTCGCAATTCAGGTCCACTTCGCCGTCGCTCATAGCGGAGAAACCAAAGTCTGGGTGTGTCGTTCCTGTGGTACCAACAGCGGCGCTCTCCGTACCGAAGCAGAAGCGAGTGCGCACGTCCGCTCGCGGCACGCGAGCCGCTGCGTGTGCGGCGCGGTGCGGCCCACGGCGCCCCCAGGCACCCCCGCCCCGCGCCCCGCTACCCGCGACCACCTCTACAGGTGTCCCGTGCCGGCATGCAGTGACACCTTCACAGTGCAGTATCTGCTGGAGCGACATATGCAGATGTTGCATGCTGTGCCACAGGTTTTCAACGGAGACGCAACACGACAAAGAAAAGTTGAGAACAACAACGGCCTTGACAATGGTGACGAAACTTGTTCTCCATGCACTGGAGCAGAAGGAAATTTAAATGCATCAGACGAAAGAAAACGCAAGAATGGTGCTGTGGCCCTGCAATGCGCGTATTGCGGGGAACGGGCCAGGAGCCGAGCGGAGCTAGAAGCGCACACAAGAGCTCATTCGGGAGCGGCTGCTGCGAGGCATAAGTGCCTCATATGTGATGAGGTTCTTCCGTCTGCTGCGGTGCTGGCTGAACATAAACTAACGCATTGCAAGGTGGTAGCTGGCGACACGTGCGCTCGTTGCAGAACGCGTCTTCCATCCGAGGAAGTGTTCCTGAGCCACATGGCGCGCCACAACCCCGCACTCCCCGCCCCCTGCGTCATCTGCCGACAGACTCTAGCCTCCGAAGGAGAAGCAAGGCTACACGCGCGCTTCCATCTCAGAACCTCTGAAGACGAACAAAGATGTGCTATTTGCCTTCGGATTCTACCAGAGAACGAAACTGGAGAAGGCCCTCGAGCGTGTTCCTCTTGCTACGCTCGCCACGCCGCGCCCCGAACCTCAAGCACAGTCGAACACGATTGCCGCTTATGCCGACGAGCCTTAGGTTCTCCAACAAGACTGCAAGCTCACCTTATAGAACACACCTTCGCAGGCATAGGTGCCTTTACTTGCTACCTGTGTAATGCTGTATTCACTAGTGCCGCTGGTCTGCAGCGCCATATACCGGACCACGCGTCTGCTCCTCGACCGTACGACTGCGCGCGCTGCGGAATGAAGTTCTTCTTCCGAGCTGAGTTAGATAATCATGCATTTGTTCATCTTGAGGAAGCAGAGTTAGCTCAAAGAGCTTTTTACGATGCGTATGCAAGAGGCGCAGCGTCCGCATGGGCCGCTTTGGCTCCTCCCGACCCCGCGCCCACTGTTGAGGTTCCTATCAAAACGGAGATCAAAGAAGAGAAAAACACTGAGGAGTACATTGAAGTGTCGTCGCCCCCGCCCCCGCCGGCAGAAAGGTCGCCGTCGCCAGTCGTGAAGCAAGAAGCGCCAGACGACGGCTGA
- Protein Sequence
- MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCEHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTGHMQGHKRDRDGREPDRKRIRCLHCGDVYRRAELQAHMVNAHGVDPATLTPTRRVASQPPPTLLACIYCTRDTFTSIEQLQLHVREAHSALLNGEGITVDQPLPTDLSKRGTEESPPLKKAKRPASGSATPQTSLSPSTLLCNQCNAALPDFEAFRAHVKAHLEEGSDLKRSSPAPCLHCGTVFADAAMSERHLSAHYLAMSCEYSCHSCARSFSAPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGETKVWVCRSCGTNSGALRTEAEASAHVRSRHASRCVCGAVRPTAPPGTPAPRPATRDHLYRCPVPACSDTFTVQYLLERHMQMLHAVPQVFNGDATRQRKVENNNGLDNGDETCSPCTGAEGNLNASDERKRKNGAVALQCAYCGERARSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRTRLPSEEVFLSHMARHNPALPAPCVICRQTLASEGEARLHARFHLRTSEDEQRCAICLRILPENETGEGPRACSSCYARHAAPRTSSTVEHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCNAVFTSAAGLQRHIPDHASAPRPYDCARCGMKFFFRAELDNHAFVHLEEAELAQRAFYDAYARGAASAWAALAPPDPAPTVEVPIKTEIKEEKNTEEYIEVSSPPPPPAERSPSPVVKQEAPDDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -