Sbip035892.1
Basic Information
- Insect
- Stenoptilia bipunctidactyla
- Gene Symbol
- zfy1
- Assembly
- GCA_944452705.1
- Location
- CALYCB010001126.1:1315920-1340105[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.72 1e+02 4.9 2.4 2 20 7 25 6 27 0.92 2 13 0.034 4.8 9.1 1.8 3 23 44 65 43 65 0.93 3 13 0.012 1.7 10.5 0.4 2 23 73 95 72 95 0.94 4 13 0.00014 0.02 16.6 0.3 1 20 100 119 100 121 0.95 5 13 0.0003 0.042 15.6 0.4 5 23 208 227 207 227 0.95 6 13 0.0058 0.82 11.5 2.0 1 23 234 257 234 257 0.97 7 13 8.9e-06 0.0013 20.4 0.2 1 23 263 285 263 285 0.98 8 13 0.00014 0.019 16.6 0.2 1 23 290 312 290 312 0.98 9 13 1.4e-05 0.0019 19.8 2.0 1 23 318 340 318 340 0.98 10 13 0.00023 0.033 15.9 0.3 1 23 344 366 344 366 0.98 11 13 0.014 2 10.3 0.9 7 23 383 399 373 399 0.87 12 13 1.8e-05 0.0025 19.4 1.0 1 23 405 427 405 427 0.98 13 13 4.3 6.1e+02 2.5 0.1 3 23 435 458 434 458 0.81
Sequence Information
- Coding Sequence
- ATGCCTCGATTTCGCAACAAGTGCTCTCGTTGTAAAATTACTTTTCAACATGACGATTTGTTTTCGAAACACTTAACAAAGTGTGAAGTTCTGTATCAGCAAAAAACACATAATCGGCCTAAAGTAGCATGTAGCAAATGTAACAAGAAGTTTATTTACAAGAAAAATAAAGTGTTACACGAGAAAAATGAACACTGCGAACTACCGACGAGTGTACCGTGTAAAATATGTCCAGCAAGATGCCCCAACAAAAAAGTCCTAAAACAGCATATTTCAAATGTTCATCTAAGAACTAAGTTTAAATGCCCCAACTGCGATTTATCTTTTGCTAGAAAGGCACATGTAGATCGTCACTTGCTACAATCAAATTGTGGTGGAGACAAAAATAACAAAAAGTTCATATGTGATAATGGTTCCTGGTCCATGGAAGTGTTGGTTGACGGCATATCCTCTTCCTCATCTATCCTGTATACTATCTTAAAGGCTAGACATTTGAACTGCAAGTTAATCAACCCTATTGGCCCTACTGGTTCAGTGGTGTTAACTTTCTCTGGCCAATCCGTCCCAGAGATAATTCTAATTTTTATTACCTCCCTCCCTATAGAATCATACATCAGACAGATATGCAATTCTGGATTCAGCAGGAAAGATAATCTGATGAACCATCTCCGCACTCAGCATATCAGCAACTCTAAAAACTACACCTGTAAATTGTGCTCTGCCTCATTCAGAACATTTGCCAGATTAGTTACTCATACACAAAGATTTCACTGGAAGAATGTAATGTTTGAGTGTGACACCTGTGGTAAGGGTACCACTACTAAGAATGCTCTGGTAAAACACATGGAAATACATGGAGACAAGAGATTTTCATGTGAAGTGTGCGGCTACACGTCCTTCACGCCGGAGGTCCTACGTCGGCACATACTGACCCATCTGCCTGACAAGCCCTTCAAATGCCAGTACTGCCCCAAGTCCTTTATACAGCTGCTCCAGCTTCGCAAACACGTGACCAAGCATGAGGTGCCCTATCCGTGTCCGCATTGTAGTGAGAGATTCGAGACTGATATCGAACTTACCCTTCATTTGAATATACACCAAGGGAAGGACAAGATGATGTGCCACTTCGAAGGATGCTCCGAGGCGGGGATCAGGTTCAGAAATCAAAAAACTCTGCTCAAGCACATGAAAAGTCATACCTCCAGTTACGTGCACCGCTGCGACGTATGCGACAAGGTGTTCTTCTCGGCGTCGTACGCTCGGCGCCACATCGCCACGCACACACTGGAGCGGCCGCGGCGCTGTATGTACTGCGTGTCGGCGCGCGCCTACGTCCGCGGGGAGGCGCTAGTGCGCCACGTGCGCAAGGTGCACCCCACTGTCTTCCAGACGCATCTGCTACACGTCAGACAAGTGCTGGTGCCCGACGCCCCGGCTAGAGAGGCCCGAATCCGGCGTTCTGAACTAGAGGCTATACTGAGCGTGATGGACGCGGAGACTGAGCGAGTGCTAGCGGCGAGTGGCGGGCCCGGCACGCTCTACGCCGGGATGGCCGTTGACGACGAAGAAACAGCCCCAGCGGACTCCAACTCCACCAGCGAGCCGGACACCTGGCAGAAGTTCGAGGAAGAGGAAATCGTGGAGGAGTTGAAGCCGCTTCTCTCTATCGAGGAGTTATCGGACAGTCTGCGCCAGTTGCTGGTCCACCTGGTGGATAGAGAGACCTTGGAGAATCTGGGCTGGCCGGAGGACAGTGTTGATGATGTACTTGAGCGTGTAATCGAAAAATGCGGCGCTCAACCGGCCGAGCGTCAAAGGTACAGTCGAGTGCAGCGCTTGCGAGAAAACGCAAAACATCTGTTCCTTAACGTGGTCGAAGACAAAACAGTCGCTAACATGCTCAACACCCACACTATCGACCAAATCATCATTTACATTCTAAACCAGGTCGCCAGCGATAATGTTCTCTAA
- Protein Sequence
- MPRFRNKCSRCKITFQHDDLFSKHLTKCEVLYQQKTHNRPKVACSKCNKKFIYKKNKVLHEKNEHCELPTSVPCKICPARCPNKKVLKQHISNVHLRTKFKCPNCDLSFARKAHVDRHLLQSNCGGDKNNKKFICDNGSWSMEVLVDGISSSSSILYTILKARHLNCKLINPIGPTGSVVLTFSGQSVPEIILIFITSLPIESYIRQICNSGFSRKDNLMNHLRTQHISNSKNYTCKLCSASFRTFARLVTHTQRFHWKNVMFECDTCGKGTTTKNALVKHMEIHGDKRFSCEVCGYTSFTPEVLRRHILTHLPDKPFKCQYCPKSFIQLLQLRKHVTKHEVPYPCPHCSERFETDIELTLHLNIHQGKDKMMCHFEGCSEAGIRFRNQKTLLKHMKSHTSSYVHRCDVCDKVFFSASYARRHIATHTLERPRRCMYCVSARAYVRGEALVRHVRKVHPTVFQTHLLHVRQVLVPDAPAREARIRRSELEAILSVMDAETERVLAASGGPGTLYAGMAVDDEETAPADSNSTSEPDTWQKFEEEEIVEELKPLLSIEELSDSLRQLLVHLVDRETLENLGWPEDSVDDVLERVIEKCGAQPAERQRYSRVQRLRENAKHLFLNVVEDKTVANMLNTHTIDQIIIYILNQVASDNVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -