Sbip039353.1
Basic Information
- Insect
- Stenoptilia bipunctidactyla
- Gene Symbol
- ZNF296
- Assembly
- GCA_944452705.1
- Location
- CALYCB010001211.1:446811-464581[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.04 5.6 8.9 0.1 3 23 127 148 125 148 0.92 2 15 0.013 1.9 10.4 1.1 1 23 248 270 248 270 0.98 3 15 4.4e-05 0.0061 18.2 0.6 1 23 276 299 276 299 0.97 4 15 0.0028 0.39 12.5 3.5 1 23 304 327 304 327 0.93 5 15 0.0037 0.52 12.1 3.8 2 23 523 544 522 544 0.97 6 15 0.00015 0.021 16.5 2.8 1 23 550 572 550 572 0.98 7 15 0.85 1.2e+02 4.7 7.8 1 23 618 640 618 640 0.97 8 15 0.43 61 5.6 0.9 1 23 647 669 647 669 0.97 9 15 0.0054 0.76 11.6 1.8 1 23 675 697 675 697 0.95 10 15 2.2e-05 0.0031 19.1 0.5 1 23 706 728 706 728 0.98 11 15 0.0026 0.36 12.6 2.4 1 23 737 759 737 759 0.98 12 15 1.8e-05 0.0026 19.4 0.6 3 23 807 827 806 827 0.97 13 15 0.0019 0.26 13.1 1.8 1 23 844 866 844 866 0.93 14 15 6.4e-07 8.9e-05 24.0 0.5 1 23 872 894 872 894 0.98 15 15 7.4e-07 0.0001 23.8 3.2 1 23 900 923 900 923 0.98
Sequence Information
- Coding Sequence
- ATGAACGACCCAGCCGCTGATTTGGACCCGCTAAGCAGCTACGACTATCAAAATCTGAACTACAATAACTACGGCATACCCGCCGTACATCACAACTATCATCCCCCAGTACGACCTTACGACCAACAATTCCTGACCCCCAAAAATAACCTGACCTTTCACGATCTTAGTCAAAATACCTTCCAAAAACCAGAACCCAGTTTAACCGAACCTAGTGTTTCGGTCAACCAAACAGTTGATACCAATGATACCAAAAATGTAGACGTCAAAAATGAAGATGTGAAACCCATTATTGATCCTAAATCGAAAAGGGTTAAAGGTAAAAAAAGCAGCTACTGGAATGCTAAAATTGACGATAAAAACTTCCAGTTCTTCGGATGCTCCATCTGCAATATTAGCTATAAAGATCTTGTTACACTTGACACCCATATAGCCGATAATCACAGTAACGAAAGAATATCTAGCTACGATTTGAGAAAGAGGAATCAAATGAAAAATAAAGGTAAGAAGAAAAAGAAGAAGAAAGCGAAAACGAAGAAAGGGAAAGAAGATTTTCAAATGGACATCGATATTAAACCTGAAGATGGATACATAGGTTCAGAAACTGCTGTTGAGTATGATAAAAATTCTACTTTAAATAACAATAGTCAAAAAGAAGATGATAGTAAAGATGCTGCTAAAATAGAGAAGAAAGATGAGAATGATAAATCAAATTCACAGGATGATAAGTTTGAGAAGATCTATAAATGTTTTGCGTGCGACAAACAATTTGCGCTTAGTTACTATATACGGCTGCACGTTCGATCTCATACAGGAGAAAAGCCATACACATGTTCAACTTGCGGCGAAACCTTCATTACTGCAAGTAAACTAGGGAGGCACAACAAACGGGTACATCTCACTTTTAAGCATCAATGCAGGATATGCTTCAGGGTTTTCTCACGATTGGAGTTATTGAAGCAGCATTTTGACAAGCGGCATTTGGCAGACAAACTGGAAGGCGAAGTGTATGACTACTACGCTATCCTGCCCTACCTCAAAGAAATAGAAGAGACCTTAAAACTAAAAGCCGAGGATACAAAACCCAAAAAAGAAGACCTCTGGTCGGAAGAACCGGAGTCCACACCAGCTACTGAGGCCAGTTCCACAGAGAACTACCCCGCTGCGGATACTGATATCAAAATTGAAATTGACAAGACTGAGGATATAGTCGAAAAAGTGATAGTTGAAGAAGTGAAAGTGATGATTGAAGAAGACGGTGTAATTAAAGTGAAAGAGGAGTGTTTAAGTGATAGTGAATTGAACTGTGATAATAATGATGGATTTGATGATCATTTCGGTGATGGTAATGATGATAATGATGATGTAAACATAGATAATGGTGATGGAAGCGGTGATAAGGATGTTGAAAGTGATATGGAGCAGCAGTCTGATAAGGATGATGAAAACGATGAAGACTACTTCCCATCAAACACATGGGCTGCCTTACCCAATACAGAACCTACTAAACCAGAAAAAACCTCAGATAAGGCAGAAACCCCGATTAGAAACAAGAACGGTACCCTAACCTGTCATTTTTGCAAGAAGACCATCAAATCTGCGACATATATGAAGATTCATTTGAGGACTCATACGGGAGAGAGGCCGTTTAAGTGTTATTTATGTGGCCGTGGGTTTATCACTTCCAGTAAGATGCATCGGCATGTGTTGACTCATTCGGAATCTTGGGAAGAGGGAGAAGACAAAATTAAATTAGAAAACGAAGACGGAGAGGCAAGAAAGAAAGCGCGAGCGAAATTCACGAAAAAACCTGCTAAGTCGGCGAAAAGGAAGGGAGATCTTAAAAGAAAGCATTCTTGCTCTTTCTGCCATAAACGGTTCCTGCATTACGAGACTTTGCAGGTGCATGCAAAGTCGCATGAGGGAGAGACTCTTAGACATCGATGCAACTTCTGTCTAGAGGAGATGAGTAATAAAGAAGAGTTGGCGGAGCATGAGAAAAGCCATACGCCTCCTAAACCCTTCCTGTGTACGATATGTGGGAAGCAGTATACGAAGAGAGAAACTATGGTATACCACAGAAAACAGCACCAACCCGACGAAAATCAGCCCCGTTTCACCTGCGACATATGCAATCGGAGTTTCAACGCGAAAACGAAGCTCGAGCGCCATCTAGCGGTGCACTCCGTACCGAAGTACTCGTACAAGTTTGAGTGTCCAGTCTGTGCGCATATGTTCAACACGAAATATCATATACAGATGCATCTGGTCACGCACCAGAAGGAGGGATTAATAGTAGAAGAAAACCGAAACGAGATCCTAGCAATGGTGCTCCAAAACGCAAGGAAAATCCCCAAACAGCCCGAAGCAACAGTACAGCCGCTGCAATCAGCCCCCGGGGATGAGCGATCCAGAATCTGTAACATATGCGGGGAGGTGTTCTCCCATTTCTACTATTTGGAGGAGCATTTGAAGAGCCACGGGTCGACTATTACTATTTTGCATGAGGATAAGGAAGAGGTAAAGAAACACATCTGCAAGATATGCAACAAAGGCTTCAAACTGCCCTATTACTTGAAACTACACAACTATATTCACACGAAAGAAAAACCCTACATATGCCAGCAGTGCGGCAAAGGATTCATTACCAAGGGAAAACTCAAAAGACATATAGAGACCCACTCCGGGTTGAAGAAGTTCCAATGTCATATATGTTACAAGTTCTTTACAAGACCGAGTTACTTAAGAATACATGTGAGGACTATACACGGTACCCAAGATTATAATTTTAGAGTGGATAAGAGTAATTATGATTATATGCAGCCTGCGGTGTCCGGTGAATAG
- Protein Sequence
- MNDPAADLDPLSSYDYQNLNYNNYGIPAVHHNYHPPVRPYDQQFLTPKNNLTFHDLSQNTFQKPEPSLTEPSVSVNQTVDTNDTKNVDVKNEDVKPIIDPKSKRVKGKKSSYWNAKIDDKNFQFFGCSICNISYKDLVTLDTHIADNHSNERISSYDLRKRNQMKNKGKKKKKKKAKTKKGKEDFQMDIDIKPEDGYIGSETAVEYDKNSTLNNNSQKEDDSKDAAKIEKKDENDKSNSQDDKFEKIYKCFACDKQFALSYYIRLHVRSHTGEKPYTCSTCGETFITASKLGRHNKRVHLTFKHQCRICFRVFSRLELLKQHFDKRHLADKLEGEVYDYYAILPYLKEIEETLKLKAEDTKPKKEDLWSEEPESTPATEASSTENYPAADTDIKIEIDKTEDIVEKVIVEEVKVMIEEDGVIKVKEECLSDSELNCDNNDGFDDHFGDGNDDNDDVNIDNGDGSGDKDVESDMEQQSDKDDENDEDYFPSNTWAALPNTEPTKPEKTSDKAETPIRNKNGTLTCHFCKKTIKSATYMKIHLRTHTGERPFKCYLCGRGFITSSKMHRHVLTHSESWEEGEDKIKLENEDGEARKKARAKFTKKPAKSAKRKGDLKRKHSCSFCHKRFLHYETLQVHAKSHEGETLRHRCNFCLEEMSNKEELAEHEKSHTPPKPFLCTICGKQYTKRETMVYHRKQHQPDENQPRFTCDICNRSFNAKTKLERHLAVHSVPKYSYKFECPVCAHMFNTKYHIQMHLVTHQKEGLIVEENRNEILAMVLQNARKIPKQPEATVQPLQSAPGDERSRICNICGEVFSHFYYLEEHLKSHGSTITILHEDKEEVKKHICKICNKGFKLPYYLKLHNYIHTKEKPYICQQCGKGFITKGKLKRHIETHSGLKKFQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRVDKSNYDYMQPAVSGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -