Sbip032704.1
Basic Information
- Insect
- Stenoptilia bipunctidactyla
- Gene Symbol
- -
- Assembly
- GCA_944452705.1
- Location
- CALYCB010001057.1:716285-718540[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.9e-07 8.3e-05 24.1 1.8 1 23 6 29 6 29 0.95 2 18 0.0011 0.15 13.9 1.1 2 23 35 57 34 57 0.96 3 18 3.7e-05 0.0052 18.4 0.6 2 23 66 88 66 88 0.96 4 18 7.8e-05 0.011 17.4 3.5 2 23 107 129 106 129 0.95 5 18 0.0012 0.17 13.6 2.8 5 23 141 160 138 160 0.92 6 18 4.1e-05 0.0058 18.3 4.4 2 23 168 190 167 190 0.94 7 18 0.015 2.1 10.2 0.4 1 23 225 248 225 248 0.95 8 18 0.002 0.28 13.0 0.9 1 23 271 294 271 294 0.96 9 18 3 4.2e+02 3.0 0.2 3 21 303 321 301 322 0.90 10 18 0.11 16 7.5 4.3 1 23 330 353 330 353 0.95 11 18 0.063 8.9 8.3 4.5 2 23 379 401 378 401 0.95 12 18 6.1e-05 0.0086 17.7 0.6 3 23 409 430 408 430 0.96 13 18 7.3e-05 0.01 17.5 3.2 2 23 437 459 436 459 0.94 14 18 0.014 2 10.3 2.4 1 23 465 488 465 488 0.97 15 18 0.013 1.8 10.4 5.2 2 23 496 518 496 518 0.96 16 18 4.7e-05 0.0066 18.1 2.3 1 23 525 548 525 548 0.97 17 18 0.0015 0.22 13.3 0.4 1 23 555 577 555 577 0.97 18 18 0.00076 0.11 14.3 5.4 2 23 590 612 590 612 0.97
Sequence Information
- Coding Sequence
- ATGAGTTATGGGAAATTTATTTGTGACTATTGCAATAGAAGCTTTAATCGGAAATATAACCTGAAGAATCACATTGAGAATATGCATTTGAATTCCACAAGCAAGTGTTCTGTATGCCACAAAACATTTGGTACATCCCCTGGTTACCTACTTCACATGAGTCGGGGCCACAATAGGAAAGGAGAACCATTCCCCGAGTGTGATATCTGTGGTAGGATATTTACAAGAAGACAAAACATCGTTCATCATATGTTGAGTATTCATAGAACACAAATGTTGAAAAATGACAAAAGGAAACAAGATGTAAGCATTGATTTAAAATGCCCATCATGTCGTAAAACATTTACAACTGAGTGTAGTCTAAAACGACACATCAAAGAGTTACATGACTTTGATTATAATAACTTAAATGTATGTATACTTTGCAACAAAGTTTTTAAACGAAAATATGGTTTGCATGCACATATTCAGAGTTGTCATAGTGGTAAAATTAAGCTAAAACAATGTTTTATGTGTCATAAATCATATGTTAGTAAAAGTCATTTGAAACGGCATATAGAATTGGCTCATGGTCAAGATGGTGATACTTTAATAAGAGCCTCTGAGTTATCAGCCACAAATAATGGTGAAGGATCCAAAGATGATACAGATGTTGAAGAAGAAAATTACAGTTTTGATTGCCAACAGTGTAATATTGAATTTGATACTGATATCTTGTTAAGACAGCATTTAAAATTGTACCATTCATTTGATACATATTATAATTACTGTATATCTGCATTGAGAAGAAATTCAAAGGAAAATAGCACATATCCTTGCCAATTCTGCGATGAACGATTTATAAACACAAATGAGTTAAGTTATCATTTAAAGCTGAAGCATAATACGGAATTTTCATTTTCAAACTGCTATGTATGCTATGAGAAGTTTTATACAGAGGAAGCTATGCTGGAGCACAAAAAAAACTGTATACAACCCAAAAACTGCCATAAATGCAGTCACTGTGACAAATTATTCACTGAAATAACCAGTCTGGAATTTCACTTACGTATTTTCCACCCCCAATTACAAGTAGCTGACCCTAATATATCGTCCACAAATAACGATGATTCCATAACGCAAAACCAAACTTTAACATGCAAATTTTGTAAAAGAATCTATTACAGTGACAAGACATTAAAGCATCATATAAAATTGAAACATACAACCGATGAAGCTGTTGATTGCCAATTTTGTGGGAAAGTCTACAATAATAAGTACTATCTAGCATCTCATATTAAACAAACACATAATGATGACGATTGGCTCCAATGTGACTATTGTGACAAGCAATTTAGAACAAAAAGAAATATAAGGCATCACATTGAATATACACACATGCGAATGCAACGGTATAAGTGCATTGAATGTGAAACTTTGTTCAAAGAGAAACGCAGTTTAAGAAAACATGTCCGTAGAAAGCATGCAAATTCGAGTTCATTCCCACAGTGCCATATATGCAATAAAAGATTTGAATCAGCAAAATCATGTAAAATACATATGAAGCTTTTACACTCTTATAATATGATTTCTCATCCTTGCCATCTTTGCTCTGTTTCATTCAGTTCAAATGACGCTTTGAAAGTCCATTTGAATACTAAACATCTAGCAAAAAATCAAATTTACAAATGTGATGAGTGTAGCATGATACTTAAGGGCCAAGAAAACTTCCAACAGCACATGGATTTACATAGAGTGACCCCTAGCACGAGTCGCGGGGCTCTACCTCAGTGTGTCCTGTGTTCAAAAGATTTTTGTAACCGTAAATCTCTGAAACGTCACATCAAAAAATTCCATGAAGAGTTTGATTTGAAAGAACTAGCCAAATGTGGTTCTACAAACAAAAATTTTAACGTTGACTGCGAAGAGTGCTTAAAGAATTTTACGGATGACAGATTCTGGACTGTGTTTCAAAGTGTCAAGAATGATCGTTACGCTAAGGTTTTTAAGTGCGAATTCTGCTCAGCTTCATATAACCCATTGGAGTTTTCCATTCAGTGGTATAAGTTAAAGAATAAATATACAGAAACAAGTAAGACTATTATGAGTGGTTTGTGTACAGCGGAGATGAGCGATGATGAGTCTCATTCTGAATTTGGGAAATTGCAGCAGTCAATGGAGGCAGAAAGTACGACATTAGATATAAAAGTAGAACTTTTTGGTACAGATTATGACGGCAATGAAGAACTTGTTAAAACTGAACCATTGTCTCCTTAA
- Protein Sequence
- MSYGKFICDYCNRSFNRKYNLKNHIENMHLNSTSKCSVCHKTFGTSPGYLLHMSRGHNRKGEPFPECDICGRIFTRRQNIVHHMLSIHRTQMLKNDKRKQDVSIDLKCPSCRKTFTTECSLKRHIKELHDFDYNNLNVCILCNKVFKRKYGLHAHIQSCHSGKIKLKQCFMCHKSYVSKSHLKRHIELAHGQDGDTLIRASELSATNNGEGSKDDTDVEEENYSFDCQQCNIEFDTDILLRQHLKLYHSFDTYYNYCISALRRNSKENSTYPCQFCDERFINTNELSYHLKLKHNTEFSFSNCYVCYEKFYTEEAMLEHKKNCIQPKNCHKCSHCDKLFTEITSLEFHLRIFHPQLQVADPNISSTNNDDSITQNQTLTCKFCKRIYYSDKTLKHHIKLKHTTDEAVDCQFCGKVYNNKYYLASHIKQTHNDDDWLQCDYCDKQFRTKRNIRHHIEYTHMRMQRYKCIECETLFKEKRSLRKHVRRKHANSSSFPQCHICNKRFESAKSCKIHMKLLHSYNMISHPCHLCSVSFSSNDALKVHLNTKHLAKNQIYKCDECSMILKGQENFQQHMDLHRVTPSTSRGALPQCVLCSKDFCNRKSLKRHIKKFHEEFDLKELAKCGSTNKNFNVDCEECLKNFTDDRFWTVFQSVKNDRYAKVFKCEFCSASYNPLEFSIQWYKLKNKYTETSKTIMSGLCTAEMSDDESHSEFGKLQQSMEAESTTLDIKVELFGTDYDGNEELVKTEPLSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -