Sbip008094.1
Basic Information
- Insect
- Stenoptilia bipunctidactyla
- Gene Symbol
- -
- Assembly
- GCA_944452705.1
- Location
- CALYCB010000190.1:84780-94296[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 2.2e-06 0.00031 22.3 2.3 2 23 197 218 196 218 0.97 2 27 0.0024 0.34 12.7 0.3 2 19 253 270 252 273 0.94 3 27 0.0044 0.61 11.9 0.3 2 23 302 324 301 324 0.94 4 27 0.0044 0.61 11.9 0.2 1 23 384 407 384 407 0.97 5 27 0.014 2 10.3 0.1 1 23 445 467 445 467 0.97 6 27 1.1e-05 0.0015 20.2 1.0 3 23 502 522 500 522 0.96 7 27 0.00095 0.13 14.0 3.5 2 23 568 590 568 590 0.97 8 27 0.0023 0.32 12.8 0.2 1 23 640 663 640 663 0.97 9 27 0.0088 1.2 11.0 0.2 1 23 712 734 712 734 0.97 10 27 0.0045 0.64 11.9 4.7 2 23 746 767 745 767 0.96 11 27 4.3 6e+02 2.5 0.6 2 23 779 800 778 800 0.90 12 27 0.0043 0.6 11.9 0.2 1 23 810 832 810 832 0.98 13 27 0.049 6.9 8.6 3.6 1 23 859 881 859 881 0.94 14 27 0.0019 0.26 13.1 1.0 1 23 892 914 892 914 0.96 15 27 2.8e-06 0.00039 22.0 0.8 1 23 922 944 922 944 0.97 16 27 0.041 5.8 8.8 0.0 2 23 967 989 966 989 0.95 17 27 0.024 3.3 9.6 0.1 3 23 1009 1029 1008 1029 0.96 18 27 0.15 21 7.1 0.7 2 23 1069 1091 1068 1091 0.94 19 27 0.017 2.3 10.1 2.2 2 23 1113 1134 1112 1134 0.95 20 27 0.016 2.2 10.2 1.0 2 21 1138 1157 1137 1158 0.92 21 27 0.031 4.3 9.2 0.1 2 23 1215 1236 1214 1236 0.94 22 27 2.6 3.6e+02 3.2 7.0 5 23 1246 1264 1243 1264 0.94 23 27 0.082 11 7.9 0.5 2 23 1275 1297 1274 1297 0.94 24 27 0.2 29 6.7 3.8 2 23 1314 1332 1314 1332 0.80 25 27 2.3 3.3e+02 3.3 0.8 2 21 1336 1355 1336 1356 0.88 26 27 0.17 24 6.9 0.5 2 23 1403 1424 1402 1424 0.93 27 27 0.00071 0.099 14.4 0.1 2 23 1435 1457 1434 1457 0.95
Sequence Information
- Coding Sequence
- ATGGCTCTCAAACTTGGAAAGTGTAGACTCTGTCTAAAGCTTGGCGACTTTTACTCAATTTTTGCCGAAGATAATACCATGCAATTAGCTGAAATGGTTATGGACTGTGCTCGGGTTAAAATACGCGAAGGTGATGGCTTGCCTGACAAAATATGTTCAGAATGCATCCAGAAACTCAGTAGTGCGTATATTTTTAAACAACAATGCGAGCGGTCTGATCAAGAATTACGTCGCAATTATGTACCGCCCCCGGGTTTCAAAGAGAGCCCACCTACGCCCAACAGACAAAGCAGTGACTCGGCTTTCTCCAACCACACAGATATATCAAACCAAACTAAACCTTCTTCATCGACTGATGGTTACGTAACGCCCGCTAGCCGCACCCGGAAACGAAGTAGAGAGAGTGTAGAGACTACTAAATCCTCCGGGAGACCGGCATCGAAACGCCTCTCTGAACTTAGGTCTGCAGAAAAAAGAGTTCGTCTACATTCCGAAACAACATCACAGCCGGAGTCCGATTACGATGACGATTACGCACCCTCGCAGTGCTCTATAGAAAGTGATTCCGATGAACCTGTTAACAAAACATCGTGTAAAATTTGCCCGAAACGTTTCTCAAGTATTCATAGTCTCAATGCACATATGAGGACTCATAAATACACAAATAGTGTTGCCAAAAATACAACCCTAGAAGAGGTTAAACCCTCGCCGAAACCCTCTCCTTCTGGTGACGCTGTAGACTCAGAAAATAAACTTAAGTGCGAGAAATGTGAAAAGACATTTAAATTGCAAATAATGCTTAAACGACATTCAGAGGTATGTGGCAAGTCACCGGTGGTATCACCTCAAAAGGAACTTTTGGTTTCTCTTGAACCAATTGATTCAAAAGTAGAAAACAAAATAGTATGCGAGTATTGTTCAGCTAAGTTTAAAGCTGTTGATAATTTGAAAAAGCATTTAAAATTTGTCCATGCTGCTGTTTTAAAGAGTGAAATCAACATTACTCCACATCGGAAAATAGATACACCTATTAAATCAAGTTTAGGAAAAGTTGTTATCCCTTGCATTTATTGTCAAAAAGAATTCGGAGATTATTTTGTGTACAATTCACATTTCAATACTTGTCCCAAAATCGACGAATCAGTCCCTTTTAAGTGTCCGTTGTGCGATAAAGTTTTAGGTAAAAAGAATGGTTTTGTAGCGCACGTGAAGCGTGTGCATTTTGACACTGTACCCCCGCTTGAGAAGGGTAAACCTGTTGAACGACTAGATAGCTCGATTGATTCGCCGACTTACTCTAAAGCGCAGCCAGAGAAGACTCAAGGAACAACATACGACTGCCGCATGTGCTCCAAAACCCTTCCTAATGAGCAAGCGCTGATCGCGCATCTCAAGGGACATCTATCTAATGTGGAGGATGACGACGAGTCCAGGCCGAGCACCATCGACGACACCGTCTCGGTGCACTCGGAGTACGGCGGCGGCGGCTCGGGTCCGCTCGCCTGCAACATCTGCGACAAGCGCTTCAAATACAAGAAGGCGCTCGAGACGCACCAGCTCAAACACGCGGAGGACGCCGTCAAAGCCGAGCCGCCGGAGGACGAGCCGGCCGACCGCCCGCCCGACGACATCCCCCCGGACGACGGCCCGCCCGACTACGACGACGACGACGAGTCCAGCGGCGAAGAGGCCGAAGACAACACGTGCGACATCTGCGAGAAGGAATTCTCGTACCGCCGGCTTCTGTTGCACCACAAGCGGACCAAGCACAACATGAGCTCGGGCACGAAGCGCGCCAAAGTGAATCTGAAGGAGTGTTCGGTGCGGTGTTTGATCTGCGACTCGGAGATGAAGGTGGGCGAGGTGAACGCGCACAACGCGACGCACATCGCGGCGGGCGTGCGGCCGCGCAACCTGTACACGTGCGCGCAGTGCGGCGAGCGCGCCAAGAGCTGCAGCGCGCTGGCGGCGCACATCAAGCTGGTGCACCGCCTCAAGCGCGCGCCCGCGCCCGCCGCCCTGCCCGCCAACCTGGCGGATTTTTGTGAGGTCGTTGTGACAAAGGCGGAACCCCTGGACCAGGTCCAGATTCACAACGGCTCTCCGGAGGTTTCGCCGGCCGCAGACGGCGGCTTTCCCTGCCCGATCTGTGCCAAGAAGATGAAGACTATTAAGTCGCTTAAACAGCACATCAACTGGCACAACATTATAGGCAACAATATACAGAAGCAGATCGAGTGCTTCGTTTGTAAAGAGACGTTCCGGTTCCAGTGCCACTACCGCGTGCACATGCGCGCGCACTACGCGGACCCGGCGCTGGACCCCGCGCTGCTGACGTGCGCGCTGTGCGGCCGCCGCTCCAAGCACCTGCGCGCCGCGCTCGCGCACAACAACTACCACAAGCAGACGCGCTTCCAGAACAAGGACTACCAGTGCTCCATCTGCAAGCGCGTGTTCGACGCGCGCAAGGTGTACCTGGCGCACATGGCCGTGCACTTCAAGCGCGGCGACACCGTCAACAACACGGTGGTGGGCGCCGGCGACGCCGTGGGCGCGGGCGTGGGCGACGGCGCGCACGCGTGCCACATGTGCGGCCAGCAGTGCGCGTCCGAGGCGTCGCTGCGCCACCACGTGGCCTGGCACTCGTCCAAGACGTCGCTGTTCGGCGCGCGGCACGACTGCCCCGTGTGCGGCCTGCAGTTCACCAACAAGCGGCGCGCCGAGCTGCACCTGCGCACGCACTACGAGGACGACGCCGGCCCGCACCGCTGCCCGCTGTGCGACAAGGGCTTCACGGACGAGGGCTACCTGCGCCGCCACATCAAGGGCCACAACTTCGACCACCAGTCGCACGTGAAGCGCCGCGAGCGCCTGGCGCGCCTGCGCAAGGACAAGCTGCAGTGCCCCGCGTGCCCGCGCCTCTACCCCGACGCCGTCAAGCTCATGCGCCACGTGCGCCTCGTGCACCCGGAGAGCAAGCTCGTCAAGCGCGACCCCGACGCGCCCGCGCCGCCGCCGCAGGCCTGCACCGTCTGCGCGCGCACCTTCGCGGACGAGCGCCGCCTGCGCATGCACATGGAGGCCCACCTGCGCAAGCCCGAGTTCATCCGCTGCAAGTTCTGCGGCATCAAAAACATCTCGATGCGCAACCACAACATCCACATCAAGGGCCACCTCACGAAGAAGTACTTGGACGAGCCGCTGCGCTGCGAGGTGTGCGCGGCGCAGTTCACGCGCGGCTACGACCTGCACTACCACCTGCGCGACACGCACGGCGTGACGGAGACGTGGGCCGCGGCCGCCGCCAGCGAGGACCGCGGCCCGCTGCGCCCGCTGCAGTGCCGCCACTGCCGCAAGCAGCTGGCCTCGCAGGGCAACTTCGAGCGCCACCTGGACTACCACAACGCGCTGCGCTGCAACTACTGCGGCGAGCGCTTCAGCGGCCGCCGCTTCCTGCGCGGCCACGAGCGGCACGCGTGCCTCGCGCGGCGCCGCCTCGGGCCCACGGAGCCGCACGCGCGCCGCGTCAAGTGCCCGCGCTGCTACAAGCCCTTCCACCTGCGCCTCAAGCTGCTGTGCCACCTGCGCACGCAGCACGGCGAGCGCCCGCCGCCGCCCGCGCCGCCCAGCAAGCACGCGCTCGTCTGCGACTTCTGCTTCCGCGACTTCAGCACGCCCGCCGACCTCGCCGGCCACAAGCTCTACCACCGCACCAACGCCTACTACGGCTGCATCTACTGCCACCGCAAGTTCAACAACCTCACCACCTTCCGCAAGCACAAGAACCACCACTTCTCGCAGCTCAACGTGGACAACCCGACCAAGTGCGAGCACTGCCCGGAGACCTTCGTCGCCTTCCGCGAGATGATCTACCACCTGCGCGACGTGCACAACGACACCAAGGAGTGGCTCATCATGCCCAAGAAGGTGACCGAGGAGGAGTGCCACATCTGCGGCAAGACGTTCTACAACCTGCCGCGGCACCTGCGGCACCACGAGGAGAACCGCTGCAAGAAGTGCGGCGAGTACTTCCTGTCGCGCGCCGCCTTCGACCGGCACGTGTGCGTCATCGCCAGCGACGACGAGGCCGCGCCCGAGGGCGTGCCGGCGCCCGCCTACGAGGAGTGCGGCTTCTGCTTCAAGCCGCTCACGCGCGTGTCCTCGCGCCTCAAGCACGACCTCATCCACCGCGCGTCCGGCGCCATCTCGTGCCGCTTCTGCCCGCTCAAGTTCAAGACGATGGACGCGTTCAACATCCACGCCTTCTCGCACCGCAACCGCAAGTACGACCGCAAGCCGATCCGCTGCCGCGACTGCGGCGAGCAGTTCGTGCGCTACGGCCCCTTCATCAAGCACATGCGCGCGGTGCACAAGTCCACCAAGAAGATGCACTACCGCGCCATCGTGCGCGCCGAGCCGTGCGCCGTGTGCGGCGACAGCTTCCCCAACCTGCACAACCACTACCGCGCGCACCTGCAGCAGCAGTGCGCCGCGTGCCGCCTGTACTTCACGTCGGCGCGCGCGGCGGCGCGGCACCGCTGCGGGCAGCCCGACGCCGACCCCGCCAAGGCCTTCCGCTGCGACGCCGACCTGGACGCGCTCATCGCCGCCTACGTGCCGCGCGACGCCAGCGACCAAGAGAAGTTCTACGGCTTCGACGACGACGCCGCGCCGCCGCCCGCGCCCGCGCAGGCCCCCGCGCCCGTCATCTCCGACATCCTCTCCCTCTGCGAGATCAAGCAGGACGACTCCAGCCAGGACGCGCCCTCCGAGCCGCCGCAACCCAACGGCGACGTCGCCGACGACGCCGACGATGACGTCGTGCAACTTTCCGACGAGGACGTCGGCGTCGTGCCCACTGCTCCCGAGGTGATCACCATCGACGACGACGACGACTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFAEDNTMQLAEMVMDCARVKIREGDGLPDKICSECIQKLSSAYIFKQQCERSDQELRRNYVPPPGFKESPPTPNRQSSDSAFSNHTDISNQTKPSSSTDGYVTPASRTRKRSRESVETTKSSGRPASKRLSELRSAEKRVRLHSETTSQPESDYDDDYAPSQCSIESDSDEPVNKTSCKICPKRFSSIHSLNAHMRTHKYTNSVAKNTTLEEVKPSPKPSPSGDAVDSENKLKCEKCEKTFKLQIMLKRHSEVCGKSPVVSPQKELLVSLEPIDSKVENKIVCEYCSAKFKAVDNLKKHLKFVHAAVLKSEINITPHRKIDTPIKSSLGKVVIPCIYCQKEFGDYFVYNSHFNTCPKIDESVPFKCPLCDKVLGKKNGFVAHVKRVHFDTVPPLEKGKPVERLDSSIDSPTYSKAQPEKTQGTTYDCRMCSKTLPNEQALIAHLKGHLSNVEDDDESRPSTIDDTVSVHSEYGGGGSGPLACNICDKRFKYKKALETHQLKHAEDAVKAEPPEDEPADRPPDDIPPDDGPPDYDDDDESSGEEAEDNTCDICEKEFSYRRLLLHHKRTKHNMSSGTKRAKVNLKECSVRCLICDSEMKVGEVNAHNATHIAAGVRPRNLYTCAQCGERAKSCSALAAHIKLVHRLKRAPAPAALPANLADFCEVVVTKAEPLDQVQIHNGSPEVSPAADGGFPCPICAKKMKTIKSLKQHINWHNIIGNNIQKQIECFVCKETFRFQCHYRVHMRAHYADPALDPALLTCALCGRRSKHLRAALAHNNYHKQTRFQNKDYQCSICKRVFDARKVYLAHMAVHFKRGDTVNNTVVGAGDAVGAGVGDGAHACHMCGQQCASEASLRHHVAWHSSKTSLFGARHDCPVCGLQFTNKRRAELHLRTHYEDDAGPHRCPLCDKGFTDEGYLRRHIKGHNFDHQSHVKRRERLARLRKDKLQCPACPRLYPDAVKLMRHVRLVHPESKLVKRDPDAPAPPPQACTVCARTFADERRLRMHMEAHLRKPEFIRCKFCGIKNISMRNHNIHIKGHLTKKYLDEPLRCEVCAAQFTRGYDLHYHLRDTHGVTETWAAAAASEDRGPLRPLQCRHCRKQLASQGNFERHLDYHNALRCNYCGERFSGRRFLRGHERHACLARRRLGPTEPHARRVKCPRCYKPFHLRLKLLCHLRTQHGERPPPPAPPSKHALVCDFCFRDFSTPADLAGHKLYHRTNAYYGCIYCHRKFNNLTTFRKHKNHHFSQLNVDNPTKCEHCPETFVAFREMIYHLRDVHNDTKEWLIMPKKVTEEECHICGKTFYNLPRHLRHHEENRCKKCGEYFLSRAAFDRHVCVIASDDEAAPEGVPAPAYEECGFCFKPLTRVSSRLKHDLIHRASGAISCRFCPLKFKTMDAFNIHAFSHRNRKYDRKPIRCRDCGEQFVRYGPFIKHMRAVHKSTKKMHYRAIVRAEPCAVCGDSFPNLHNHYRAHLQQQCAACRLYFTSARAAARHRCGQPDADPAKAFRCDADLDALIAAYVPRDASDQEKFYGFDDDAAPPPAPAQAPAPVISDILSLCEIKQDDSSQDAPSEPPQPNGDVADDADDDVVQLSDEDVGVVPTAPEVITIDDDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -