Sbip007963.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stenoptilia bipunctidactyla
Gene Symbol
-
Assembly
GCA_944452705.1
Location
CALYCB010000185.1:294968-335896[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 5e-05 0.007 18.0 1.7 1 23 538 560 538 560 0.97
2 20 4.7e-05 0.0066 18.1 0.1 1 23 566 588 566 588 0.98
3 20 2.2e-05 0.0031 19.1 5.6 1 23 607 629 607 629 0.98
4 20 3.9e-06 0.00055 21.5 5.7 1 23 635 657 635 657 0.99
5 20 0.00015 0.021 16.5 5.7 1 23 663 685 663 685 0.97
6 20 7.7e-07 0.00011 23.7 5.2 1 23 691 713 691 713 0.98
7 20 7.4e-07 0.0001 23.8 2.5 1 23 719 741 719 741 0.98
8 20 0.00011 0.015 17.0 6.7 1 23 747 769 747 769 0.97
9 20 2.1e-05 0.0029 19.2 6.4 1 23 775 797 775 797 0.98
10 20 5.1e-07 7.2e-05 24.3 1.9 1 23 803 825 803 825 0.98
11 20 2.2e-05 0.0031 19.1 7.7 1 23 831 853 831 853 0.98
12 20 1.3e-06 0.00018 23.0 6.8 1 23 859 881 859 881 0.98
13 20 4e-05 0.0056 18.3 5.0 1 23 887 909 887 909 0.97
14 20 1.8e-06 0.00025 22.6 5.8 1 23 915 937 915 937 0.97
15 20 7.8e-06 0.0011 20.6 7.2 1 23 943 965 943 965 0.97
16 20 6.3e-07 8.8e-05 24.0 5.8 1 23 971 993 971 993 0.98
17 20 1.2e-05 0.0016 20.0 7.6 1 23 999 1021 999 1021 0.97
18 20 7.9e-07 0.00011 23.7 3.9 1 23 1027 1049 1027 1049 0.98
19 20 0.00077 0.11 14.3 0.3 1 23 1056 1078 1056 1078 0.96
20 20 0.027 3.9 9.4 5.8 1 23 1086 1108 1086 1108 0.99

Sequence Information

Coding Sequence
ATGCGCATCGAAACCCGTTTCGAACGTCACTCCTACCGCTTGGGCTGGCCGCCCGCCCAACCCGCGGTACAGAATGCGAAGGTCAGTTTTGATCGCTTGGCGTTCTGGGTCACCGTCGCTCCTATCGACGAGATTCTTGAGCTCGGCGTTGCACTCAACGCCGGCCAGGACTCTCTCGCCGATGCTCTCCCCATCCTATCCAAGCACGCCTCCCTCGTGAGGAAGCTTCAACAAGCCAACCGATTCGGTCCTGCGATAAGCTTTCGTGACGGGTTGTCTCTTGGGACGCCCGGTACGCAGCCTCTGACTCCAATTGGCTGTCGTTCAGATGATGAGATTAACCCAACTCGGGACAACTCAGCAAAGGGGGTGTTTAGCGGTCTTGGAAACTCTTGTACAATATGTTTTCAGCAGCAGAATTCAAGACAGCAAACAAACCAATCACAGCCAAATAACAATTTACCTCCCTCAACCTCTGCAACTGATTTACGTGTAAACCAAGCTGCTGTAAATGTTGCTTTGTCCAGCGTCGCCAAGTATTGGGTATTTACAAATTTATTTCCTGGACCAATTCCTCAAGTATCAGTCTATGGATTACCAGCTGGTACAAGAATAGAAAATGGAAAAGCTGTCCAGGACATTGGACAAGCTCATGCAAGTATTTTAAATGGTGATCCAAACATAATTCTTGGCCATACAGGGCAGGGACAGGTCACAGTATCAGGTCCAGGTGGCCAACAAATTCCTGTTTCACAAATCATTGCTACACAATCTGGACAAACACATGAAGCACTGGTGGCCCACAACCAACAGGAGCTGGCATCCCAATCTTCCAGCTCCGGTGGTCAGATCACAGTGTCAGGAGGTCAAACTACTCATCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACAACACCATAGCATTGATATGGGCCATCATTCTCAACAACACATCATTCAGCAACAGCTCATGGGGAGGAATGACCATGCAAATCAGCAGATCCAACTTACTGTCAGTGAAGATGGGATAGTGACAGTGGTAGAGCCTGCAGGCTCGAAACTGGTTGACAAAGATGACATTCATGAGGCAATCAAGATGCCTTCGGACCACACGTTAACTGTGCACCAGTTGCAACAAATTGTTGGACAGCAGGTCATTGACAGTGTAGTTCGCATCGAGCAAGCAACAGGAGAACCGGCTAATATTCTTCTAACTCAGAACCCCGATGGCACCACATCCATTGAGGCTAGTGCTGCAGAACAGCTCATTGTAAAGGATGAGAAGAATTCAAAATTAGAAACTGCCCAATTTACGATACCTGCTGAGATAAAGGACATTAAGGGCATAGATTTAAAGAGTGTCAGTGCCATGGGTGCAATGGACGGTGCAGTTGTAAAGATATCAGCGGGAACAGCAGACCATGATCTTCATGCAATGTACAAAGTTAATGTTGAAGATTTATCTCAGTTGCTTGCCTATCATGAAGTGTTTGGGAAACTCAATAGTGATGGGCAGCCACAACAGGCTAAGGTACTTCATGATGTCGAAGTGGAAGTAGAAGCGGGTACAAGTACCGCCATTGCTGATGCAGATAATTCGCCCGGACATCACGTTTGTGATATTTGCGGAAAAATATTCCAGTTTCGATATCAACTTATAGTTCATAGGCGTTATCATGGTGAAAGCAAACCGTTTACTTGTCAAGTCTGTGGTACAGCGTTTGCCAATCCGCTGGAACTCTCGCGGCATGGCAAGACACATTTAGCCGCAGAATCAGGCGACAGGGCACAAAAGCGCCTCGTTCAAGACAAGCCCTATGCTTGCACGACATGCCATAAGACATTCTCACGAAAAGAACATCTGGACAATCATGTTCGTAGCCATACAGGGGAAACTCCTTATAGATGCACATATTGCTCCAAAACATTTACTCGAAAAGAGCATATGGTGAACCATATTCGAAAGCACACGGGAGAAACTCCGCATAGGTGCGATCTTTGCAAGAAAAGTTTTACAAGGAAAGAACATTTTATGAACCATGTAATGTGGCATACAGGTGAAACGCCCCATCAATGTCAAATTTGCGGGAAGAAGTATACTAGAAAGGAGCATTTAGTGAACCATATGAGATCTCATACGAATGATACTCCATACCGTTGTGATTTATGTGGCAAGTCGTTTACAAGGAAGGAGCACTACAACAACCATATATTGTGGCATACTGGTGAAACTCCTCATCGCTGTGATTTTTGCTCAAAGACTTTCACTCGCAAAGAGCATTTACTGAACCACGTTCGCCAACACACTGGCGAGTCTCCGCATCGTTGCAATTACTGCTCGAAATCGTTTACAAGGCGGGAGCATTTGGTGAATCATGTTAGGCAGCATACTGGGGAGACCCCATTCCAATGTGGATACTGCCCTAAAGCGTTTACTAGGAAAGACCATTTAGTTAATCACGTCCGTCAACATACAGGGGAGTCCCCGCACAAATGTTCATATTGCTCTAAATCATTTACACGCAAAGAGCATTTGACCAATCATGAAAGACAACACACGGGGGAGTCACCACATAGATGTACTTTCTGTGGGAAGTCCTTTACGAGAAAGGAACATTTAAATAACCATATAAGACAGCATACGGGTGAAACACCGCATAAATGTACTTACTGTGAGCGCGCGTTCACTCGTAAGGAGCATTTGAACAACCACGTGCTTCAACATACGGGGAACTTACCGCACACTTGCGAGTATTGCGATAAAACCTTTACGAGGAAGTCGCATCTCGTCAGTCATGTTAGGCAACATACTGGAGAGACGCCGTTCAAATGTACATACTGTTCAAAGTCGTTTTCTAGGAAGGAGCATTTGACGAATCATATACACTTGCATACGGGGGAAACTCCACATAAGTGTCCGTATTGCACTAAAACATTCTCCAGGAAAGAGCATCTTACTAATCATGTTCGAATCCATACCGGCGAGTCGCCCCATCGCTGCGAGTATTGCCAGAAGACGTTCACTCGCAAGGAGCATTTGACAAATCATTTGAAACAGCACACCGGTGATACGCAGTTTTCGTGTAAGATGTGCTCTAAGCCGTTTACGAGGAAAGAACACCTAATTACACATATGAGATCGCACAGTTGTGGAGAAAGGCCGTTCAGCTGTGGCGAGTGCGGGAAGTCATTCCCCTTGAAAGGCAACCTTCTATTCCATGAGCGGTCGCACCGAAGTAATTCAGCCAAGCAATTCCGCTGTGATGTTTGCTCTAAGGAATTCTTCTGTAAAGGTCACTTAGCATCTCATCGTAGAACGCATCAGGATACGACAGAAAACGCAAGTGAAGCTCCAGCGGAGGCTGAAGATTGCGGTGACTGCAACAAATGTGAGAAGGAGCCTTCAAGGGTTGAACTTAAACGGGAACCAAGGTCATCTGTGGACGATGGAACTGTAGAAGTCCAAGTGGTAGCTTCTAACAATTCATCTGTGATGATTACTACGCAACCAGTCCGAACGAGCCTTCCCGCCGCTGGGGCAGTGACAACGGACACATTCACCCACCCTACGGCCAATCAGCATCACACCACCACCAGCATTTCCCACCATCCTGTGACAGTTAATTACTAA
Protein Sequence
MRIETRFERHSYRLGWPPAQPAVQNAKVSFDRLAFWVTVAPIDEILELGVALNAGQDSLADALPILSKHASLVRKLQQANRFGPAISFRDGLSLGTPGTQPLTPIGCRSDDEINPTRDNSAKGVFSGLGNSCTICFQQQNSRQQTNQSQPNNNLPPSTSATDLRVNQAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGTRIENGKAVQDIGQAHASILNGDPNIILGHTGQGQVTVSGPGGQQIPVSQIIATQSGQTHEALVAHNQQELASQSSSSGGQITVSGGQTTHQQVPNNRVEFVQHHSIDMGHHSQQHIIQQQLMGRNDHANQQIQLTVSEDGIVTVVEPAGSKLVDKDDIHEAIKMPSDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILLTQNPDGTTSIEASAAEQLIVKDEKNSKLETAQFTIPAEIKDIKGIDLKSVSAMGAMDGAVVKISAGTADHDLHAMYKVNVEDLSQLLAYHEVFGKLNSDGQPQQAKVLHDVEVEVEAGTSTAIADADNSPGHHVCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGTAFANPLELSRHGKTHLAAESGDRAQKRLVQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCTYCSKTFTRKEHMVNHIRKHTGETPHRCDLCKKSFTRKEHFMNHVMWHTGETPHQCQICGKKYTRKEHLVNHMRSHTNDTPYRCDLCGKSFTRKEHYNNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCSKSFTRKEHLTNHERQHTGESPHRCTFCGKSFTRKEHLNNHIRQHTGETPHKCTYCERAFTRKEHLNNHVLQHTGNLPHTCEYCDKTFTRKSHLVSHVRQHTGETPFKCTYCSKSFSRKEHLTNHIHLHTGETPHKCPYCTKTFSRKEHLTNHVRIHTGESPHRCEYCQKTFTRKEHLTNHLKQHTGDTQFSCKMCSKPFTRKEHLITHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHRSNSAKQFRCDVCSKEFFCKGHLASHRRTHQDTTENASEAPAEAEDCGDCNKCEKEPSRVELKREPRSSVDDGTVEVQVVASNNSSVMITTQPVRTSLPAAGAVTTDTFTHPTANQHHTTTSISHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01030446;
90% Identity
-
80% Identity
-