Sbip016314.2
Basic Information
- Insect
- Stenoptilia bipunctidactyla
- Gene Symbol
- -
- Assembly
- GCA_944452705.1
- Location
- CALYCB010000740.1:350104-352705[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.9 1.6e+03 0.2 0.0 17 27 24 34 12 34 0.78 2 2 1.8e-06 0.00029 21.8 0.0 18 42 103 127 101 129 0.89
Sequence Information
- Coding Sequence
- ATGTCTCGTCGTTTCAGTGAAATTGAGTACCATGAGATGGTTCGTGTTTACTATGACGACGAAGCAAATTTGAGCCTCAGAGAGGCGGTGAGAATCTATGAGGAACGTAGCATTGAAAGTTTGCGAAGGCGAGATGTTGAAAATCCAGCTGTACCTAACAGATCAACGATTATGAGGGCAGTGTACAACTGGCGTGATTACCAGGAGTTTCATATACCCAGCGGCTTTCAAGCACGTGGTCGGCCATTGATCAGCCCTCAATTAGAGGAAGAAATACTGGAGTACTTTCGTCTCAACCCACGGCACAGTACAAGAGAAGCTGGAAGACACTTTGGTGTCAGTCATACCACCATTTGGAGCCTTCTCAAAAGAGAAGGACAGCATGCATACCACTTTCAAAAAGTTCAAGCATTGCATGAACAAGACGCCGCCGGCCGTCTGACATTCTGCCAGTGGTTTCTTGAAAATAGGCAAAGAAACATTTTATGGACGGATGAGGCTATGTTCACCAGGGTGGGCCTGTACAACGTCcataatgagcattggtgggcgtacagaaatccacacGTACTAGAAGTAAACTCGCGCGCCGAGCGGAGGCTGTGCGGGGAGCGCGGAGCGGCCGCGCGCAGCCGCGGTGATAGCGCGCCGGTCACTCACCCCGCCGTGCGTCAGCTGTTCAATACTTTCGTATTATTACAGAAGCGTTGA
- Protein Sequence
- MSRRFSEIEYHEMVRVYYDDEANLSLREAVRIYEERSIESLRRRDVENPAVPNRSTIMRAVYNWRDYQEFHIPSGFQARGRPLISPQLEEEILEYFRLNPRHSTREAGRHFGVSHTTIWSLLKREGQHAYHFQKVQALHEQDAAGRLTFCQWFLENRQRNILWTDEAMFTRVGLYNVHNEHWWAYRNPHVLEVNSRAERRLCGERGAAARSRGDSAPVTHPAVRQLFNTFVLLQKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -