Sbip043398.1
Basic Information
- Insect
- Stenoptilia bipunctidactyla
- Gene Symbol
- -
- Assembly
- GCA_944452705.1
- Location
- CALYCB010001409.1:359330-367708[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-06 0.00041 21.3 0.0 18 42 102 126 100 128 0.89 2 2 3.6 5.7e+02 1.6 0.0 13 24 261 273 257 274 0.84
Sequence Information
- Coding Sequence
- ATGTCTCGTCGTTTCAGTGAAATTGAGTACCATGAGATGGTTCGTGTTTACTACGACGAAGCAAATTCGAGCCTCAGAGAGGCGGTGAGAATCTATGAGGAACGTAGCATTGAAAGTTTGCGAAGGCGAGATGTTGAAAATCCAGCTGTACCTAACAGATCAACGATTATGAGGGCAGTGTACAACTGGCGTGATTACCAGGAGTTTCATATACCCAGCGGCTTTCAAGCACGTGGTCGGCCATCGATCAGTCCTCAATTAGAGGAAGAAATACTGGAGTACTTTCGTCTCAACCCACGGCACAGTACAAGAGAAGCTGGAAGACACTTTGGTGTCAGTCATACCACCATTTGGAGCCTTCTCAAAAGAGAAGGACAGCATGCATACCACTTTCAAAAAGTTCAAGCATTGCATGAACAAGACGCCGCCGGCCGTCTGACATTCTGCCAGTGGTTTCTTGAAAATAGGCAAAGAAACATTTTATGGACGGATGAGGCTATGTTCACCAGGGTGGGCCTGTACAACGTCCATAATGAGCATTGGTGGGCGTACAGAAATCCACACTGCTCTGTGGTAGATGCGAACCTAGACCAGCTGTTAGACAAGTTTATGCACCTGAAAATATCACCAAATAGCAAACGAAATATACAACAAATAGATCCGAAACTAGTTGATGTGAAGAATGTTTTCAAGAGTACCTTTATCAGGTTTGCCGTGCAGGAGGCTAAGCTACGACAGTCAAATCAATCCGACTCACCTCGGTTTACCGTAACGCCAGTGCGCAGGAGTGGCCGTTTGAGTGTGCGAAGCGCCGCAAAAAGATCTCCACTTCGAATTTGTGCCAGTGTAAGACAAGCACAGATAGTTGCAGACAGCGCCATCTTTGTGCCTAACCCGGCGTTGGTGCGAACACCATGA
- Protein Sequence
- MSRRFSEIEYHEMVRVYYDEANSSLREAVRIYEERSIESLRRRDVENPAVPNRSTIMRAVYNWRDYQEFHIPSGFQARGRPSISPQLEEEILEYFRLNPRHSTREAGRHFGVSHTTIWSLLKREGQHAYHFQKVQALHEQDAAGRLTFCQWFLENRQRNILWTDEAMFTRVGLYNVHNEHWWAYRNPHCSVVDANLDQLLDKFMHLKISPNSKRNIQQIDPKLVDVKNVFKSTFIRFAVQEAKLRQSNQSDSPRFTVTPVRRSGRLSVRSAAKRSPLRICASVRQAQIVADSAIFVPNPALVRTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -