Sbip001117.1
Basic Information
- Insect
- Stenoptilia bipunctidactyla
- Gene Symbol
- -
- Assembly
- GCA_944452705.1
- Location
- CALYCB010000019.1:1685918-1687891[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-06 0.00094 20.1 0.0 12 38 36 62 29 66 0.86 2 2 0.36 58 4.8 0.1 27 43 448 465 446 466 0.92
Sequence Information
- Coding Sequence
- ATGGAGGATAATCGAAACAAGACTTTGTGCATACGAAAGCGCAAAATGAAAGGTCAAAAACGAAGAAATGATGATGCTTTATCCTTCAAAAATGCTTACCTAAAGGTCGTAAAAGATAAGTGGTCGGTTTACAAGGCATCTAAGGAGTATGGCATACCATGGTCTACTTTGAAGAGGCACATAGCTAATCATGGAGGTGAAAATTTCGATTTACCTAAACTTGGAAGACCGTTTACACTGGACAGCGATCTTGAATGTAAGTTTGTTTCTTATATAATTAAAATGCAAGAACTAGGATTTGGCCTCAGCGTCACAGACATCAAAGCCAAATGTTATGCTTTGGCAGTCCAAGCAGGAAAAGTACACCAGTTTAACGATGCTAAGCACAAAGCTGGGCCTTATTGGTGGTGGTCATTTAAAGAGCGTTACGGGCTTTCTTTGCGCACTCCAGAAAAGCTTGCAGCATGCCGAGCTGTTACTGCCAACAGGCACAACATTGACGATTTTTATGAAAAGCTTTTGACGGTTTTGGTTAAGCTGGATATTCAACAAAAACCGGAACGGATCTATAACTGCGACGAGACGGGTGTAACATTTGTCGTTAAACCGTCAAAAATAGTCACTCAAACGGGAAAAAAAATAATCTACAGTAGAACCTTTGCAGAGAAAGGTGTCACACAGACGGTGCTTGGATGTTGTAGCGCTAGCGGAGCGTTTGTACCTCCCTTAATAATTTTTAAAGGTGTCCGCATGGTTCATGATTTGGCAAACGGTGCCCCAGAAGGGTCGATCGTAAGATTATCTAAAAACGGCTGGATTAACTCCGAACTATTCCTAGAGTGGATGCATCATTTTGTAGCCAAGATTCCACCAGCAAGACCGGTACTTTTGATAATGGATTCTCATTCTACGCATGTTAGTCCAGAAGTTATCGTGTTCGCTATTAGAAACGACATTCATTTGTTTACTTTTCCCAGTCACACAAGTCATCTTCTGCAACCGCTGGACGTTTCCGTATACAAGTCGTTGAAAAATGCATGGACTAAGGTCCTTAATGATTACAAGCTTGAACATCCAACGAGTGCGCCAACTAGATTGGACTTTTGTCGCCTATTGACACCAGCCTATGAGCATGCATTTCAACCTTCGATAATAATGAATGGCTTTCGAAAAGCTGGTATTGCACCGTTTGATCGAAATGCTATTTCTGATGAAAGTATTGCCCCGTCACTGATACAGCCAAAAGACCTTCTGTCACCGAATATTGAATCAGCTGCTAGCAATGCTGGAGACAATCGTAGTACTGCGTCACCTTCGGTTTCTTCTTTGCTTTCGATTCCTGAAATCCCGCAGTCTACTATTAGTACGCGACGATCTAAGAGAAATCCACAGGCCCGGTACTTGACAACTCGAAGCGAAGAAGAAAATATTATCCTAAACGAATCCGCAGTCCCAGTAGCAAATAAGGAGGCAGTTATCACGGTTACTGTTTCCCCTGACTCTCCTACTCCAGGCCCTTCAAACGAATACCAACATGGTAAATTTTCAAAAGTGAGGAAAAGAAACACGCCAAAATCGTACAAAAGTACTATGTGTGACTTTTGTGGTGTTCACTACTCCCAAGATGTGGCACTTAGAAACGGAGCTGTTTGGGTAGAGTGCATGAATTGTGGCAAATGGTACCACCAGGAATGTACTGGCACTGAGTCACCACAGTTCCTGTGTGATAATTGTGACAAAGGTGACTTTTCGAGCTCTGATGACAGTGATTGGGCTCCGGAATAG
- Protein Sequence
- MEDNRNKTLCIRKRKMKGQKRRNDDALSFKNAYLKVVKDKWSVYKASKEYGIPWSTLKRHIANHGGENFDLPKLGRPFTLDSDLECKFVSYIIKMQELGFGLSVTDIKAKCYALAVQAGKVHQFNDAKHKAGPYWWWSFKERYGLSLRTPEKLAACRAVTANRHNIDDFYEKLLTVLVKLDIQQKPERIYNCDETGVTFVVKPSKIVTQTGKKIIYSRTFAEKGVTQTVLGCCSASGAFVPPLIIFKGVRMVHDLANGAPEGSIVRLSKNGWINSELFLEWMHHFVAKIPPARPVLLIMDSHSTHVSPEVIVFAIRNDIHLFTFPSHTSHLLQPLDVSVYKSLKNAWTKVLNDYKLEHPTSAPTRLDFCRLLTPAYEHAFQPSIIMNGFRKAGIAPFDRNAISDESIAPSLIQPKDLLSPNIESAASNAGDNRSTASPSVSSLLSIPEIPQSTISTRRSKRNPQARYLTTRSEEENIILNESAVPVANKEAVITVTVSPDSPTPGPSNEYQHGKFSKVRKRNTPKSYKSTMCDFCGVHYSQDVALRNGAVWVECMNCGKWYHQECTGTESPQFLCDNCDKGDFSSSDDSDWAPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01367784;
- 90% Identity
- iTF_01367784;
- 80% Identity
- -