Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2.1e-09 3.4e-07 31.1 0.0 2 41 83 123 82 125 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2.1e-09	3.4e-07	31.1	0.0	2	41	83	123	82	125	0.93

Coding Sequence: atgggctGTTACGTTGTTAACTACGACGATGTCGAAGCAATAGTAAAAGCGCATCCAACTCAATCTCAGGCTGAGATTGCTGCGGACTTTGGAGTTAGCGTCAAAACGGTGCTGCGTCAAATTACCTGTGTAGGGTCGGTTGAGACTAGCTCTACCGCCCCTGGAAAAAAAAACAAATATAAGTCTCGTGTCAGACTAAGAAGTTCAAGACGAGAACTAGGATCCAGGATGTACAAAAACTACTCAGAAGAAATGTTAATGCTTGCGTGTGAAGCTGTGCAGTTGGGTCAAATTTCATCAAGAGATGCTCAACGACAATTTGGAATCCCAAGGCGAACTATCGTTAATAAAATAAAACGAGTACACACAAAATCCGTTGGACATCCTACTGCTCTATCGACCAAAGAAGAGGAACAAATTGTTAAGGTCTTACAAGCTTCCAGCAGTTTTGGCTCCCCGCTAACAAAACTAGAACTAAAGCTATTGGTTCACGAATACCTAAAAAAAAACTCACGGGATCATACTTTTAAAAATAAGATACCTGGTGATGCATGGGTGCAAGGCTTTTTGGCTAGGCATGGAGATCAATTAACTTTGAGAACTAGTCAAAATATATCTAAGGCAAGAGCTGAGAAGGGAGCTCAAGAAATTATTAACTATTTTAATAATTTAAATACGACATTGAAAGACATACCAGCTGAAAATATCATAAATTTCGATGAAACGAACCTTTCAGACGACCCTGGCTCTTCCAAGTGCATTTTTAGAAGGGGAGTAAAGTATCCGGAGAGAATAGTAAATTCCACCAAAGGAAACATATCTATCATGTTTACGGCCACCGCAGCAGCAGGCGTAGCAAGGCTTGTCAAGACAAGACTTGTGTCACAGATTATATCACAATTTGAGCGACATAATTGCTTAGTCTTATACAGCAGCACGGGGCAAGTTTAA
Protein Sequence: MGCYVVNYDDVEAIVKAHPTQSQAEIAADFGVSVKTVLRQITCVGSVETSSTAPGKKNKYKSRVRLRSSRRELGSRMYKNYSEEMLMLACEAVQLGQISSRDAQRQFGIPRRTIVNKIKRVHTKSVGHPTALSTKEEEQIVKVLQASSSFGSPLTKLELKLLVHEYLKKNSRDHTFKNKIPGDAWVQGFLARHGDQLTLRTSQNISKARAEKGAQEIINYFNNLNTTLKDIPAENIINFDETNLSDDPGSSKCIFRRGVKYPERIVNSTKGNISIMFTATAAAGVARLVKTRLVSQIISQFERHNCLVLYSSTGQV

Sequence clustering based on sequence similarity using MMseqs2