Sbip021230.1
Basic Information
- Insect
- Stenoptilia bipunctidactyla
- Gene Symbol
- -
- Assembly
- GCA_944452705.1
- Location
- CALYCB010000820.1:3062315-3063160[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-13 9.7e-11 42.5 0.4 2 40 14 52 13 56 0.90
Sequence Information
- Coding Sequence
- ATGGATCCGCAAAACAAAAAAAAACGAGGTGATTGGACTGAATCGCAACTAAAAGCAGCCCTCGCAGCAATTAAGAGCCAAAAGATGTCACAACGACAAGCAGCAACCAAATATAGTGTACCAAGGCGCACATTGAGAAATCATCTCAAGTCAGGTTCATCGCAAAAAATAACTGGTCGCTTGCCGGTACTAACTAAACTACAGGAAAGTGATTTATGTAAAAGGATAATTAGGCTTGCACAAATAGGCATGCCATTAACACCTAAAATCGTACGCAAACAGGCTTATGAATTTTGCAAAGCCAATAATATACCAAATCCTTTTAATGATGGAAAGAGTATCGCGGGCAAAAAATGGTTAAGAAATTACATAAAACGTAATCCAGATATATCTCTTCGAAGAGCTCAAATATTAAATCCAGCGAGGGCACAAAAGCTCAATAAACCCATCGTACAGAAACATTTTGAAGCCCTTAAAGTGATATATGACGAATTAAATATTTCTGCTCATCCAGAAAGACTTTACAATATGGACGAAAAGGGATGTTGGTTAACACTCCACCACCAACAGAAGGTGTTTGCAGCTAAGGGGGCTAAAAGGGTACATTTTGTCAGTCAAGAACATGCCGAGAATGTTACCATTGCTATGTGTGTGAGTGCAACCGGCAATACTGTGCCTCCTATGATATTATTTAAAGGGAAAAGATTGAGGCCTGAATTTTGTGACAACTTACCACCTGGTAGCTTGGTAAAGATGGCCCCAAAGGGCAGTATGACAACTGAACTGTTTGTGGATTTCATACACCACCTGGGCCAGAATAAATGTCAAGGTCAAATGTCTTATTAA
- Protein Sequence
- MDPQNKKKRGDWTESQLKAALAAIKSQKMSQRQAATKYSVPRRTLRNHLKSGSSQKITGRLPVLTKLQESDLCKRIIRLAQIGMPLTPKIVRKQAYEFCKANNIPNPFNDGKSIAGKKWLRNYIKRNPDISLRRAQILNPARAQKLNKPIVQKHFEALKVIYDELNISAHPERLYNMDEKGCWLTLHHQQKVFAAKGAKRVHFVSQEHAENVTIAMCVSATGNTVPPMILFKGKRLRPEFCDNLPPGSLVKMAPKGSMTTELFVDFIHHLGQNKCQGQMSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01178334;
- 90% Identity
- -
- 80% Identity
- -