Sbip030160.1
Basic Information
- Insect
- Stenoptilia bipunctidactyla
- Gene Symbol
- -
- Assembly
- GCA_944452705.1
- Location
- CALYCB010001010.1:1154631-1168670[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-08 2.1e-06 28.6 0.0 4 39 142 178 139 182 0.90 2 4 2.7e-12 4.3e-10 40.4 0.2 2 39 194 231 193 234 0.94 3 4 5.6e-13 8.9e-11 42.6 0.0 4 45 251 293 248 293 0.96 4 4 6.4e-18 1e-15 58.4 0.0 1 45 300 345 300 345 0.96
Sequence Information
- Coding Sequence
- ATGCCTGGACACGATCTATGCCAAGTGAAATGCGAGCAAACTTCAGATGATGAAATTCAACCCTTTCCTCGCGGTTTCCTCTGCATTCAATCAGCGTCCCTGGAGGAGCTGGCTCCATTGGCACCAGCAGGCCCGGCAGCCACTCCCGTGTGTGTCAAGCAGGAAATAGATGTTCAGGCTTCCACTTTAGAAGTTCTGGAGACCACCACTCTCAGCAATACAAAGAGCCCGCATTTCATTGATCATTTGGAGTCACGATTAGGTACGATCAGTGACACAACGGAGTTTATGCCGTTTCTAACAGTTAAAGATGAACCATTATCTGAAGGAGAGCAACCACTTCTAAGTGGCGAAGACACCAGCGATTCCTGCAGCAACCACGATGCGGTTACCAGAGGCAGTCCCAAAAGCTGGTCGCAACAGGACATGGAAAATGCTTTGGATGCCTTGAGAAATCACAACATGACTTTAACTAAGGCATCTGCGACATTTGGCATTCCATCGACAACGCTGTGGCAACGTGCTCATCGCCTGGGCATTGATACTCCTAAAAAAGAGGGCAACGCCAAGTCCTGGAGCGACGAAGACCTGCGGGCTGCCTTGCATGCCCTTCGTACTGGTGCTATATCAGCTAATAAGGCTAGCAAAGCGTATGGCATCCCCAGCAGCACCTTATACAAAATAGCTCGTCGCGAGGGCATCCGACTGGCGGCTCCCTTCAACGCTGCTCCAACCACCTGGAGACGGTGTGATCTCAACCGAGCGCTGGCTTCCATACGGTGCGGCGCGGCTTCCGTACAGAAAGCGGCGGCCCAGTTTGGCATACCGACAGGAACTTTATATGGGAGATGTAAACGAGAAGGTATAGAATTATCGAGATCGAATCCAACACCATGGTCCGAAGATGCAATGGGCGAGGCGCTGGAAGCTGTCAGGGTTGGTCAGATGTCTATAAATCAAGCCGCAATACATTACAATCTGCCTTATTCGTCTTTATATGGGCGATTCAAACGATGCAAGTACCCACTTTCTCAGGAATATCAACATCATCAGGAAATTCCACTCAGCCCCGAAAATCCACATCAAAGTCAGCATCAAGATGGTTACTCCTATCACCAAATTATATCCACGCCTCACGCTGCTGTGCAGCACTCATCCGAAAATGATCATTCCAATGTTTCATATAATGTACCTTACCATGAAAACAGTTTGCACAACACGCCACATTCATCTGCCAGTAACGCCCAATATCAAGACCAGCTTGACCTTGGCCCAATAATGTATTACTCCCAAAATTGCAGTAGTGAAATTGTTACTAGTTGA
- Protein Sequence
- MPGHDLCQVKCEQTSDDEIQPFPRGFLCIQSASLEELAPLAPAGPAATPVCVKQEIDVQASTLEVLETTTLSNTKSPHFIDHLESRLGTISDTTEFMPFLTVKDEPLSEGEQPLLSGEDTSDSCSNHDAVTRGSPKSWSQQDMENALDALRNHNMTLTKASATFGIPSTTLWQRAHRLGIDTPKKEGNAKSWSDEDLRAALHALRTGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWRRCDLNRALASIRCGAASVQKAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYPLSQEYQHHQEIPLSPENPHQSQHQDGYSYHQIISTPHAAVQHSSENDHSNVSYNVPYHENSLHNTPHSSASNAQYQDQLDLGPIMYYSQNCSSEIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -