Basic Information

Insect: Stenopsyche tienmushanensis
Gene Symbol: -
Assembly: GCA_008973525.1
Location: Contig198:493926-497834[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.8 1e+02 3.4 0.0 2 23 252 273 251 273 0.92

2 9 0.0021 0.13 12.5 0.8 1 23 289 311 289 311 0.96

3 9 0.024 1.4 9.3 1.6 1 23 317 341 317 341 0.97

4 9 0.00036 0.022 15.0 0.2 1 23 346 368 346 368 0.96

5 9 0.0027 0.16 12.2 2.1 1 23 375 397 375 397 0.98

6 9 0.0001 0.0062 16.7 0.2 1 23 403 427 403 427 0.98

7 9 2.2e-05 0.0013 18.8 3.8 1 23 433 455 433 455 0.99

8 9 0.0075 0.45 10.8 1.6 2 23 462 484 461 484 0.92

9 9 0.0045 0.26 11.5 0.8 1 20 490 509 490 511 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.8	1e+02	3.4	0.0	2	23	252	273	251	273	0.92
2	9	0.0021	0.13	12.5	0.8	1	23	289	311	289	311	0.96
3	9	0.024	1.4	9.3	1.6	1	23	317	341	317	341	0.97
4	9	0.00036	0.022	15.0	0.2	1	23	346	368	346	368	0.96
5	9	0.0027	0.16	12.2	2.1	1	23	375	397	375	397	0.98
6	9	0.0001	0.0062	16.7	0.2	1	23	403	427	403	427	0.98
7	9	2.2e-05	0.0013	18.8	3.8	1	23	433	455	433	455	0.99
8	9	0.0075	0.45	10.8	1.6	2	23	462	484	461	484	0.92
9	9	0.0045	0.26	11.5	0.8	1	20	490	509	490	511	0.95

Sequence Information

Coding Sequence: ATGGAGGAGGCCCTCGTTTTGGTCCTTGACTATGAAGGCGTCTGTCGCCTTTGTCTCCAAGGTCGCGGTGCTTTTTCTGACATCTTCGCAGTCGATGATGAAACTCCACTAGCTGAGCAAATCAGGACGCTCACCTCTGTGGAGATGTCTGATACGGATAATTTGCCCAGGAAAATATGCCACAAATGTCGATACATTGTAGAACTATGCTACGAATTACGTTCTACTGTTATCAAATCAAACAGACTGCTCTGTAATTCCGTCGAAGCCGATGATTTGATAGGCGAAGTAGCAGAAGCCTTCAGAAAAACGGACAACGAAGACATATTCAATGATGATAATTTTGAGGAAATTATACAAGAACAGATGATTAAAGTCGAAGAAATTGGCATGTTAGAGGACGTACGACCAAGTAAGAAATTCAAAAGAAAAGCCGAAGGAATGGATTATTTTTCCGATAGAAGCACCATTGAAAGCATGGAAAATACTATTGAATTACACACTGAAAGTAACGAATCACATATGGATTGTAAAATGGAAATAATGGACAACTGCGATTTCAAACGGGGCATAGACGGCGGAAAGGATTATACGTCCAGCAAGGAAGTGACTCTGGATGAAATAAAACTCGACGATTCCGGAACATCACAGGTGCACGTATTGCCTGAAATGTCGGACGACGGCGGCTCGGAAAATTTAATGGCGAGGCTGAAAGAATCTGCAAATAATGCAGAGCGTCCTCTCAGGCAACAGACCTGTCAGCTCTGCTTAGAAGTGCTTCCCGATCGACCCACTCTGTTAGCGCACGTCGCCGATCATTATTGCAATTCGAGTTTGGTACCGTACACGTCCGCAACAAAACCGTTTGCCTGTCAAGAATGCAATCTCAACTTTACAATTAAAATGGATCTGATAATTCATCATCGCGATCATTTGGATATCAATCCGTACATGTGCAAAATGCCCGGATGTAATTTTGATATGCGAACAAGAGAAGCATTACGGCATCACATGTACACGCATGCTAAAAAAAAGTACGTTTGTAATATTTGCGGTGCAAGATATCGACGCAAAGTAGAAATCGTTCGACACAAAGTAAGACATATAGACGAGGGACATCTTTTTCGATGCGGCTTATGTTGGGTCACGTGTAAAAATCGACTCAGTTTAAAGGCACATCTTAAAAATCATGAAAACGGAAGACGGTTTAAATGTGACTTTCCTGGATGTCCAAAAGGATTCTTTTCCAATTCTGATTTAGTTATTCATAGTAGATCCCATTCCAACGATAAATGTTTTAAATGTTCTTTGTGTGTATGCGCGTATACATCTCAATCTCAGCTCAATAGACATTTGCGTCGACATGAAAAACCTGGTCCCACTAAATGCGATAAATGCTCTGAAGTATTCGAGGACTACGGATCATTTTGCAACCATCGAATTGCTACTCACGGGGAATGGCAACCACACAGATGCAAGGGCTGCAATCAAGGGTATCAAAGCGAACAACAACTCCAAAAGCATTTGGGTAGATGTAAGGTAGCTTTAACGATGAAAGCTCTCGGAACCGAAGATGTCACCATAATAATAGAAGAAAAAGATTCTTTTAGTTGTTAA
Protein Sequence: MEEALVLVLDYEGVCRLCLQGRGAFSDIFAVDDETPLAEQIRTLTSVEMSDTDNLPRKICHKCRYIVELCYELRSTVIKSNRLLCNSVEADDLIGEVAEAFRKTDNEDIFNDDNFEEIIQEQMIKVEEIGMLEDVRPSKKFKRKAEGMDYFSDRSTIESMENTIELHTESNESHMDCKMEIMDNCDFKRGIDGGKDYTSSKEVTLDEIKLDDSGTSQVHVLPEMSDDGGSENLMARLKESANNAERPLRQQTCQLCLEVLPDRPTLLAHVADHYCNSSLVPYTSATKPFACQECNLNFTIKMDLIIHHRDHLDINPYMCKMPGCNFDMRTREALRHHMYTHAKKKYVCNICGARYRRKVEIVRHKVRHIDEGHLFRCGLCWVTCKNRLSLKAHLKNHENGRRFKCDFPGCPKGFFSNSDLVIHSRSHSNDKCFKCSLCVCAYTSQSQLNRHLRRHEKPGPTKCDKCSEVFEDYGSFCNHRIATHGEWQPHRCKGCNQGYQSEQQLQKHLGRCKVALTMKALGTEDVTIIIEEKDSFSC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -