Stie008387.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- prdm10
- Assembly
- GCA_008973525.1
- Location
- Contig049:197358-204384[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00037 0.022 14.9 0.1 2 23 218 239 217 239 0.96 2 9 2.7e-06 0.00016 21.7 3.4 3 23 264 284 263 284 0.97 3 9 0.0012 0.073 13.3 0.4 3 23 421 442 419 442 0.95 4 9 0.017 1 9.7 3.6 1 23 449 472 449 472 0.94 5 9 8.1e-05 0.0048 17.0 0.2 1 23 477 499 477 499 0.98 6 9 2.3e-05 0.0013 18.8 1.4 1 22 505 526 505 526 0.96 7 9 0.019 1.1 9.6 1.7 1 23 564 587 564 587 0.96 8 9 0.00015 0.0089 16.2 3.9 1 23 609 632 609 632 0.97 9 9 2.3 1.4e+02 3.0 6.9 3 23 671 694 669 694 0.86
Sequence Information
- Coding Sequence
- ATGTGCGGCGTCGAGCAAAATTCAGCCGCCAATATTTCTGTTGAAAATATTGAAAATGAAGAATCTCACACCATAAATAGTTTTGATATTGCAAACTACTTTAATGAAGATGAGAATATGTTACCTTCAAATAATAGACGAGGTCGTAAGCAACCACCAGATACAGATATGTCTATTACTTGTATTCCTGATAAATCTGTTCCATGCAGAGCAAAAGCTTCTTTGCCTGCAAGTCATTTATGGCTCTGTAATAGCGATGAAAATGGATCGCATGTTCTCGGTGTATTTGCTCGTCGACGAATACCTGTGCGTGCACGGTTTGGCCCAATTGAAGGTGTTCGAAAAATACTACCGCAAGGTGGTTCTTCGCAACTCACTGGTCCTGGACCACATTTTCTTATACACACAGAAGATGGCGATTATAGCATCGATGTTTCTGATGAGAAAACATCAAACTGGATGCGTTATGTGCGCTTTTCTCCCGGAGCTTATCAAAACATTTGTCTTCAGCAATTAGATGATAGTTTATTCTTTACAAGCTCAAAACCGATTGCACCCCAATCGGAATTACTACTGGGCTATGGCGCAACGTATGCCCGTCATTGGGGGCTTCCATGTACTGAACAAAGTGATGAAGAACCAATTGATTGGCCATGTTTCGAATGTCCCTTACAATTTGCATCTTCTCCTGAATTACAAAAACATCTTAACTCTCACGATGAGATTGAAAAATCCTCTTCGCTTCGCCGAGTTAAGAAAAAGAATACTACTAAAAACTCAGATAATCATTGTGCTGTATGTAATCGCACATTTCCAAGAAGTTACAGTTTGAAACGCCACATGAAGACACATGTAAATATATTGACAACTGATTTGGAATCTCAATCCCAAGTATCTAAAAGAGTTAACCTGAAACCTAAACAAACAAATGGCTTAGTTGAAGAAGAAGCTATAAATATATTGAACAATTCTATTGATGAGAAAGGGCAAGACTCCAGCATACAAAATTTAGACGCCAGTCAAAATAAATGGGAAAATGACGACGATCAAATAAATTCAGATGATTCGTCATCTAAAAACGATGTTATTTTGATATCCAACAATCAAACATGTGGCAAATCATCATCTATCGACAATTCAATAATCCAAAATCAAGAATGCATGGAATGCACAAGCAATGATTTGGAAAACGATGTTTGCGTACATAGGAAAATAAATCAAACCGTGCAAATGAAAAATGATGCCCAATGGAATTTGGATTGTCTCTTGTGTTCGGAAAGTTTTGATCATCCCACATCGCTCACTGAGCATATACAAATACAACATAAGAAAATAGACGGATCTTTTGATTGTCATCTTTGTGAGAAGAATTTCTCTGATTTGAACGGTATTCGTAAACATCTTCATAATAGTCACAATATTCAGAAATATAATTGCAAGGAATGTCCTGCTAATTTTGATACAGCTGATAAACTACTCTCGCACATGCTTAAGCATACTAAAGTTACTACATTTATTTGTCCCAGTTGCAAAAAGCAATTTAAACGCAAAGACAAGCTTAAGGAACATATAAGAAGGCAGCAGCGTTTTATCAACAACAATAAAGAGGCTATCTATTTATGTGTTGAACGTTCAAGTGCTTCTCTTTCAAGTCCTCAAGATGACCCTTCTGCTTATTTGTCATTCACATTCAAATGTCATCCTTGTCGTCTTGGGTTTAAAAGAAGAGGAATGCTGGTCAACCATTTGGCGCGTCGTCATCCTGAAGTCAGCAGAGCATCTGTCCCAGAGTTACAATTACCTATTATGAAAACAGCACGTGATTATTATTGTCAACATTGTGACAAAGTCTACAAAAGTAGCTCCAAAAGAAAAGCCCATATACTTAAAAATCATCCAGGAGAATCATTGCCACCTTCTAGTCGCGATTTGGGTGGTACTGAATCGAACGAAATTGAGGTTTTAGGATACAGCGCTTGTGTAGGTGCCGTTTCTAGTTCACCGCATCATTGCCCTTACACACCTTGCCATAAACAATACGCTTCAAAAGCCAAATTGTCTCAACATATCAGGCACAAACATTTGCCTGCCGAGTCAAAAGAAAATTCGAATGTTGAAAAAGTTTCTAGCTGCTGTGATCTTGAACTCAACAACTCGCATAGATTTGATGGAATATCAACAAATGATATACATATGTATAGAGATCATGAGATCGCCCCATTGATGAATGATCAACTTATGAATGAAAATACATATGCCGAATCCGCCGATACAAATATTGTTTCTTCGTCTGGCGTTAAGATAAAACGTCCATTACCACCCTTGCAACGAATGTCTCCATTTAATAAAAATATCAATAATAAACCGTTGATGACTTCAGATAATCAGGGTTTGCTTCATTCTTTTGCGAATGAAAAGGGACAAAATATTGAGTCCAAAGGTTTCGTCGATCAAAATAATGTTCACGAAATGTCGAAACCTTTGATTGAAACCAAGCAAGATAAATCCAATGATGCAAATCAACTTGTTTGCAAAATGTCAAAATCCGACTGGAAAAATAATTCGGATCCATTAACATTGTTCGAATCAATAAGGAATGGAACGATTCGCCTCATTCAGATAGGCAACGGGGTTGAAATCTTCGACAAAGCAGAATCGTTCAACTTAAACGGGCTAGAAAAAGATATGTTCGATAAGACGGTCTTGGTCAACGAAATTCCGAAACTTCACATATCCGGTCACATTTTGAGCATGGAGGCTAACAAACTACCCCCCATGAGTGTGCTCTCGAAGAACACAACCGGAGGTAATTCCTTAACGACGCAGTACACCGACCGTTGA
- Protein Sequence
- MCGVEQNSAANISVENIENEESHTINSFDIANYFNEDENMLPSNNRRGRKQPPDTDMSITCIPDKSVPCRAKASLPASHLWLCNSDENGSHVLGVFARRRIPVRARFGPIEGVRKILPQGGSSQLTGPGPHFLIHTEDGDYSIDVSDEKTSNWMRYVRFSPGAYQNICLQQLDDSLFFTSSKPIAPQSELLLGYGATYARHWGLPCTEQSDEEPIDWPCFECPLQFASSPELQKHLNSHDEIEKSSSLRRVKKKNTTKNSDNHCAVCNRTFPRSYSLKRHMKTHVNILTTDLESQSQVSKRVNLKPKQTNGLVEEEAINILNNSIDEKGQDSSIQNLDASQNKWENDDDQINSDDSSSKNDVILISNNQTCGKSSSIDNSIIQNQECMECTSNDLENDVCVHRKINQTVQMKNDAQWNLDCLLCSESFDHPTSLTEHIQIQHKKIDGSFDCHLCEKNFSDLNGIRKHLHNSHNIQKYNCKECPANFDTADKLLSHMLKHTKVTTFICPSCKKQFKRKDKLKEHIRRQQRFINNNKEAIYLCVERSSASLSSPQDDPSAYLSFTFKCHPCRLGFKRRGMLVNHLARRHPEVSRASVPELQLPIMKTARDYYCQHCDKVYKSSSKRKAHILKNHPGESLPPSSRDLGGTESNEIEVLGYSACVGAVSSSPHHCPYTPCHKQYASKAKLSQHIRHKHLPAESKENSNVEKVSSCCDLELNNSHRFDGISTNDIHMYRDHEIAPLMNDQLMNENTYAESADTNIVSSSGVKIKRPLPPLQRMSPFNKNINNKPLMTSDNQGLLHSFANEKGQNIESKGFVDQNNVHEMSKPLIETKQDKSNDANQLVCKMSKSDWKNNSDPLTLFESIRNGTIRLIQIGNGVEIFDKAESFNLNGLEKDMFDKTVLVNEIPKLHISGHILSMEANKLPPMSVLSKNTTGGNSLTTQYTDR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -