Stie014662.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- -
- Assembly
- GCA_008973525.1
- Location
- Contig103:896957-921647[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.3 78 3.8 0.3 5 23 319 337 318 337 0.93 2 11 0.0011 0.062 13.5 0.0 1 23 340 362 340 362 0.97 3 11 0.38 23 5.4 5.0 2 23 371 391 370 392 0.91 4 11 4.2e-06 0.00025 21.1 3.0 2 23 398 419 398 419 0.98 5 11 0.0002 0.012 15.8 1.1 3 23 427 447 425 447 0.98 6 11 0.042 2.5 8.5 0.1 2 20 454 472 453 474 0.93 7 11 4.1e-05 0.0025 17.9 0.6 3 23 492 513 491 513 0.95 8 11 0.12 7.2 7.0 0.2 3 23 521 541 520 541 0.96 9 11 0.00029 0.017 15.3 0.2 1 23 552 574 552 574 0.97 10 11 0.00014 0.0086 16.2 6.7 1 23 580 602 580 602 0.99 11 11 0.00047 0.028 14.6 0.2 3 23 610 630 608 630 0.98
Sequence Information
- Coding Sequence
- ATGGAGACGGAGACGGAGTCCTCCGAAGTCAGCACCTGGCGGCCGTTCTGCAGGGCGTGCCTCGCGACCGACGCCCTTACTTCGCTCGTTGACGGCAATGGCGACCTAAAAGACAGATTTCATGACACCACCACCGTTGAGATACAAGAAGATGGATTGCCCGCTTATCTCTGTCTAAATTGTCTGACAGTACTTAATCGTTGTCATGAATTCAAAAAACAATGCATCACAATCGACAACCAACTCAAATCGGAACTCTCAGAACTTAAAGTCATGGATCCCGACGATTTGAGTTCTGATATTACCATAGACATTGATAAATCCCAAATAAAAGCCGAGCAAGACATGGACGAAGACGACGTGTACGTGATTGTAGTAAACCAAGATAATACCGATGATAATGATATAATCAAATCACCGATTCACAATAAAGAAACAAACTTAAAAAAGGAATCTTCAGAAATTAAGGACGAGTCAGCAACCCAGGATTACGAAACCTTGTATACAATTCACAATAATGATGAAACTATGATATCCAGTGAAATTAACGGTGTTTACATAGACGATATTGAAGAGAAAAAAAATAGCTATGAACCGCTGAAGATAAGCAAAACGGATTTCCCCTTAGATTGTGAACTACCGTATAACAATAACGATGATATTAATGACACGGAAAAATTAAATATCATTAATCTGTTCAAGGACAGCGCTCCCATAAATAACGGCATTATTAAATTGGAAGACGACGAAGCACTCGTTGATGTCGTATTTCCATCTGAAATCACAGCCGAAGACGTCGTCACATACACGCAGGAAGAAATTGTCGTAGCCAACGCAGATGATAATTATGAAGTAATCAATTGTGATATATCCGAACTTAATATCGAAAACTTCGGTAAACCTTTACATGTAGAACTAGATGTACCTCAGCAAGAAGACGGGGCATTCTTATGTGAATGCGGCTTATCTTTCATGGAACACGCCGACTATGAAAAGCATGCCTATGTTCATAATAAATTCACTTGTCCTTTATGCGGCAAAGGATTCGAATCGGAAGAAGTCGTCACTGGCCACATGATGCTACATGAGCATCCTTTAAATTCACATCTCAATTGCCCGTTTTGTCACTTAAGCTTCAAACGCAACTTTTTTACGGTACATATCAATATGCATCATACTCCATATCGTCCGACGTGTCCTATCTGCAACAAGACATTCGCTACGGAGCATAATCGTAAACGGCACATGTTGACACACACCGGCACCAAAGAATTTGGTTGTAGTATTTGTTTCATGCAATTTAATCAGAAATCGGCCCTACAAAATCATCGATTAACTCATAATAGCCTCGGACAAATAAGTTGTAATTATTGCTTCAACGATTTTTCATCCACGGAAGCTCTCAAAATACATATAGAGGAAGGCTGCGAAGCTGCCATTTCAGAAGAAAGCAACGGTGATAAAAAATCGTTCTGTAATAAATGCAAGAAAAATTTCGCAAACGCCGATGCGCTACGGTCTCACATGGAGAATGTGCACGTTCAACAAAGCGACCTTCTATGCTCGGAATGCGGCTTGGTTTTGCCGACGAAGAAAGCTATGCACGCGCATTCCCTCATACATCGTCAGAACCGAAGCAAGAACCCCAAACGATTCTGTTGCGGTATATGCGGCAAAGGCGTAGCCAGTCAGGCCATGCTCACCATGCACGAGCGAGTGCACACAAACGAAAGACCCTTCAAATGCAGAAAATGCTCGTTTGCCTTCAAAACCAAAACCCATTTGACCACCCACCAACTAACGCACACTCAAGAGAAACGTTTTGGCTGTTCCGTCTGCTTGAAATTCTTCGCGTTAAAAGGTAATCTCGTCGTCCATCTAAGAACGCACACCGGAGAACGGCCGTACGTCCATCTATCCCTGTCGGCCCGCCTCATGGGAATAAGAGAGCGGTACCCTTTTCGCCGAGTCGCCTTTAAGAGACATTGTTTCGAAGCCCAAGGCAGCGCAGGACTTTCACCGCAAGATATCATAATTTGTCGCAAAGGCACGAGGCCCCACGGCGGTTGGTCGAATTTAAAAGTGGACAGAATTCGACCCATATGCGCTAGGAAGGACACTGGTGAATTTACCGGTTTGATGGGACCGCTTTCGCGGGGATGGGAATCGGCGGAGGAACGGGATGGCAAAGGTGTGTGGGCTCAGAGCAATAAAGCGAGCGGCTCGCCGTGGGCCGGTCCTCCTGACGCCGTTGGGGCTCTGGACCCGCTCACCCTACTTACGCCCACCGACTCGCCGAGCGATCAGGAAGAATTACTGCCGCAAATAAGCGAAGAGGTTTGCTGTCCGCCTTCCTCGAAATCGAACACCCGCAAATTGCGAGCGACGACGGCAGAACTCGTTCCCCGACCGGGCCGGTGTCGGATGCGCGACCGTTATGCAAAGAAAACGGACGAAGAGCCTTCTTTTCTTGCTTGCTGCTGCGAGATTGGACCGAACGAATCAGCTCGACGGTAA
- Protein Sequence
- METETESSEVSTWRPFCRACLATDALTSLVDGNGDLKDRFHDTTTVEIQEDGLPAYLCLNCLTVLNRCHEFKKQCITIDNQLKSELSELKVMDPDDLSSDITIDIDKSQIKAEQDMDEDDVYVIVVNQDNTDDNDIIKSPIHNKETNLKKESSEIKDESATQDYETLYTIHNNDETMISSEINGVYIDDIEEKKNSYEPLKISKTDFPLDCELPYNNNDDINDTEKLNIINLFKDSAPINNGIIKLEDDEALVDVVFPSEITAEDVVTYTQEEIVVANADDNYEVINCDISELNIENFGKPLHVELDVPQQEDGAFLCECGLSFMEHADYEKHAYVHNKFTCPLCGKGFESEEVVTGHMMLHEHPLNSHLNCPFCHLSFKRNFFTVHINMHHTPYRPTCPICNKTFATEHNRKRHMLTHTGTKEFGCSICFMQFNQKSALQNHRLTHNSLGQISCNYCFNDFSSTEALKIHIEEGCEAAISEESNGDKKSFCNKCKKNFANADALRSHMENVHVQQSDLLCSECGLVLPTKKAMHAHSLIHRQNRSKNPKRFCCGICGKGVASQAMLTMHERVHTNERPFKCRKCSFAFKTKTHLTTHQLTHTQEKRFGCSVCLKFFALKGNLVVHLRTHTGERPYVHLSLSARLMGIRERYPFRRVAFKRHCFEAQGSAGLSPQDIIICRKGTRPHGGWSNLKVDRIRPICARKDTGEFTGLMGPLSRGWESAEERDGKGVWAQSNKASGSPWAGPPDAVGALDPLTLLTPTDSPSDQEELLPQISEEVCCPPSSKSNTRKLRATTAELVPRPGRCRMRDRYAKKTDEEPSFLACCCEIGPNESARR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01367205;
- 90% Identity
- iTF_01367205;
- 80% Identity
- -