Basic Information

Insect: Stenopsyche tienmushanensis
Gene Symbol: RREB1
Assembly: GCA_008973525.1
Location: Contig170:189639-198012[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.013 0.77 10.1 0.3 1 23 101 123 101 123 0.89

2 15 2.7e-06 0.00016 21.6 3.4 1 23 129 151 129 151 0.99

3 15 5.7 3.4e+02 1.8 0.0 2 23 226 249 225 249 0.86

4 15 0.082 4.9 7.5 5.6 1 23 254 277 254 278 0.95

5 15 0.29 17 5.8 0.7 1 20 325 344 325 346 0.90

6 15 0.081 4.8 7.6 0.1 1 23 476 498 476 498 0.97

7 15 0.0009 0.053 13.7 0.9 1 23 507 529 507 529 0.99

8 15 0.00074 0.044 14.0 2.0 1 23 535 558 535 558 0.97

9 15 0.00073 0.043 14.0 2.8 1 23 999 1022 999 1022 0.96

10 15 7.7e-05 0.0045 17.1 1.3 2 23 1343 1364 1342 1364 0.97

11 15 0.017 1 9.7 5.1 1 23 1370 1393 1370 1393 0.97

12 15 0.0022 0.13 12.5 1.6 1 23 1435 1459 1435 1459 0.95

13 15 0.96 57 4.2 0.3 1 23 1541 1564 1541 1564 0.94

14 15 0.012 0.74 10.1 0.4 2 23 1622 1643 1621 1643 0.94

15 15 0.014 0.81 10.0 5.9 1 23 1649 1671 1649 1671 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.013	0.77	10.1	0.3	1	23	101	123	101	123	0.89
2	15	2.7e-06	0.00016	21.6	3.4	1	23	129	151	129	151	0.99
3	15	5.7	3.4e+02	1.8	0.0	2	23	226	249	225	249	0.86
4	15	0.082	4.9	7.5	5.6	1	23	254	277	254	278	0.95
5	15	0.29	17	5.8	0.7	1	20	325	344	325	346	0.90
6	15	0.081	4.8	7.6	0.1	1	23	476	498	476	498	0.97
7	15	0.0009	0.053	13.7	0.9	1	23	507	529	507	529	0.99
8	15	0.00074	0.044	14.0	2.0	1	23	535	558	535	558	0.97
9	15	0.00073	0.043	14.0	2.8	1	23	999	1022	999	1022	0.96
10	15	7.7e-05	0.0045	17.1	1.3	2	23	1343	1364	1342	1364	0.97
11	15	0.017	1	9.7	5.1	1	23	1370	1393	1370	1393	0.97
12	15	0.0022	0.13	12.5	1.6	1	23	1435	1459	1435	1459	0.95
13	15	0.96	57	4.2	0.3	1	23	1541	1564	1541	1564	0.94
14	15	0.012	0.74	10.1	0.4	2	23	1622	1643	1621	1643	0.94
15	15	0.014	0.81	10.0	5.9	1	23	1649	1671	1649	1671	0.98

Sequence Information

Coding Sequence: ATGCAGGACATGTCTTGTCTGATAAGCGAACCTGCAAACTCACCACCCAGAGTCCTCAGATCAGATGTCACTCTGGAAAAATCGTGCACCGATACCAAAGATAGAAAAACAAAAATTATGCCAAAGACTCTGCGAAACCATCACAGGGAATCGCCGATAGAAAAGAAGAAACCGTCCACCGTCGCGAAGAACTGCGAAGACCCGAAGAGCTCGGCGGAAGACACGGACAGCGCCGGCACGAGCTCAGAAAAAAATAGAAAATCTCAAGAAATTCTACTCAAGGATACCAAAAACGAAAAATACACGTGTAAACTTTGCGACAGAGTCTTCTCGACGATCGCCGCATCGGAGAGACATTCTCTGAGTCACCAAAACGAAAAATCATTCAAGTGCAAAATGTGCGATCTCACATTTTCGACCAACGGCGCCATGCACCGACACATGAGGACCCACAAGGCTTCCCAATATTCCGACAGCGACGATTCCGCCAAGGACGACAGCGAAGGATCCGGCGAACTGAGACACGCCGGCTCCGAAACGCCCAGGACTTCCAGAAAGCGCAGATCTGAACACAACAACAACGGCAGCACCGACAACAGTGCCGAAGAGGAGTCTTCGACGCTCAAAAAGAGGACCAAGACGATCAACAACAACGTCATAAGCGAAATCAAGCTGACGTGTCCGGTATGCGAGAGGGAAGATTTTGCGTCCCTCAACGTGCTGGAGACTCACATGGAAGAGGAGCATCCGGACTATCAGTTCAAATGCGTCACTTGCAGCCTCAGCTTCAAAAACCACCGCGCCCTCAATCTCCATCGCTTCATGACGCACCATTCGACCCTCAAGAAACTCGCCAACTCCGTTTCGGGATTCGGCGATTGTACTTTTATCGACTTTTCGAGTCAAAAGTTCCCAGAAATAGCCAAAACGGTGTGCGAGAAAAGTGTCCACAAATCGGTAACCGAACAGACTTTCAGATGCAAATACTGCTCGAGGGATTTCCCGTGCGAGAGCGCTCTGGAGATCCATGCGAACAACTGCGGTTCGGACGACGCCAGATCGCCGGCCGACAATCAAGATTGGAGCGAATCTTGCGACACCGCCGAGAACGTCCGACGCGACGACTTCTTCGCCAATCTCGACTTGCAGAACAAGTCCCCCGACTCCGAACAGAGGAGATTCTCGACCGAACTCTCCAAGACAAAAATTCAAAATTCTTTCCGTTCGCCCAGAGACGCGCGCAACATCATCGACAGTCAGAAAGATCTAGCCGATATCCAATCGATCCTGTCGGTGACGTCTACGGGAAGTCTCCTAGAACAGCTGACCCAGAAAGCTCGCGATCACATGCCGAAAGATCAAGAGCCCGAAGAGATGCAAGACGTCTTCGCTGCTGAATTCCGCAAAATGAAGCTCCGCGGCGAATTCCCCTGCAGACTCTGCACGGCCATCTTCCCCAATCTGAGAGCCCTCAAGGGTCACAATCGAGTGCATCTGAGCGGCAACGGTGCCGGCCCTTACCGATGCAACATGTGCCCCCATTCCTCTCTGGACAAAGCCGCCCTCGTCAGGCACATGCGGACTCACAACGGAGACCGTCCTTACGAATGCGCCGTGTGCAACTACGCCTTCACCACCAAAGCGAACTGCGAGAGACACCTGAGAAACAGGCATTCGAAAATCACCCGCGAGGACGTCAAAAGATCCATCATCTATCATCCTTCGGAAGATCCCAACAACGACGAGATGAACTCGAAGCTGAACATTTCCAGGGATGAAATAAAGCGCACTCCGATGTACGCCAGCGCCGACGTCGATCACCGGGACGATGCGATCGATCGCATCAAAAACGAGAGGAGCACGCCGATCTCCCATTTCCCGAGAGACATTGTCAACTTTGCCGAGCACGCTCTTCCGATACCGATTCCCAGAGATCTGTCCATCGTGATCCCGCAGCCCAGAGACGTTCTGAAAAACCACTGCATCGCGGAACCGACGAACGATTCCGCTCCGAAGGCGGACGAAGGATGTCAGCCGAGGATCAAAGTCAAGGGCTACTCGCAGTTGACTCAGATCCCGGAGTTCTCCGAATCGGATAACGAGAAAGATAACTACAGCGACGAGGAAATAGATCCCGCGGAAGACGCTCGCCCGATCAAGCCAGCGATCTACTCGACCGAGACGCCCATGGACCTGAGCACCGGCGAATGTCAGGACGACGTTCTCGATCTGAGCAAGAAGAGAGACAGCAGGTCCGACGACAGACCGTCGATGGACTCCGACCAAGATGAATATTTGCCGAAAACTTTAGAATTCAACAACAACACTGCGATAGCGGCCAGCGTCTTGGAAAAGACGCAACAGTTGCTGTTCGCTCGTCAGCAGCAGCTGATGAAGTTCCCCAAGCTCGACCCGACCGCGAACTTTTACGCGACTCAACTCTCTCAGCTCTATCAGAGAGCCGGCGTCCCGTTCTCGGGCCTGGGCTTGCCGCCCGCTTTTCCTCTGAACCCGTACTTCTTGCAGCCGAATCCGTTTTTGGCCGCGGCCGGTAACCCTCAGAACGTGGCGGAAATGAACGAAAGAATCCAGAAAGAAATAATAAGAGGCCTCCAGCTGTCGGGAGGCGGACTCGTCGGCGTGGAGACGAACAAGCTCGTGAGCAACATGGTGTTGGCCAACGAGAGGTTCCAGGCGCTCCAGCAGCAACACCAGGCCATGAACGGCATCGGAGGCGCGGATCTGAAGTCTCACGCTCCGAACTCGATCGTCAAGACCGAAGACGACGTCGAATCGCAGCAGCTGCACGTTAGCGTCGATCCTCCGACGGTCGTTCCGTACGCGCCCGTCGCGTCGTCTCCCGCCATCGCCTCGCCGAAGGCCCAGAGGAAGGAGACTGCGTCCAACCAGAGTCCGAACTCCGTGAAGATGGTCATAAAGAACGGCGTGCTGATGCCGAAGCAGAAACAGAGACGCTACAGAACGGAGAGACCGTTCTCCTGCGAGCACTGCTCGGCGAGGTTCACTCTGAGATCCAACATGGAGAGGCACATCAAGCAGCAGCATCCCCAGTATTGGTCTCAGCGCCAGCGCTCGACGATCGGCAGCGTTCCGCGAAAGAATCCCATATCGATGGTGCCCCAGAGCATGGCGGTACCGCAAGGCATCTCTCTGAACTACGACGCCCGATTCGGCTATCTGAAGAGCGTCCACGGCGAGACGGGGACCGACGCGCAGGAGAGCGACAGGAAGGACGGATCTCCCGCTCGGGCCTCTTCGATCAACAGATCGCCGATATCCGACCACGTCAAATACGCGATACTGGCTCAACAGCTCAAATCTCAGAATCCCTCCTCGCACTCCGACGACCTCAAGAACAGAATGGAGACGATCGCCAACGGAGACAACGAGGAGGAAGACGAAGAGGACGCCCTGATCATCGACGAGGAGACCGTCGACGACGGATCGCAACCGAGCGGACAGCTCCAGCCGAAGCGCGCGGCGGAGGCTTCCCGAGATCAAAATCTGCTCGCGAAGAGGGTCGCTCGGGACATCCTGACCGCCGCCAGAAGCCAACACGACGTCTCCAAAGACTTCGACTGGAAGATAGCCGGCAATCTGATCAACAAAAATCTCGCCAATCGAAACGCCGACATCCCGACCTTCGTCTCCCAGATCGGGTCCGACGGGGCCGAGGAGAGCCGGGCGAACGACGGCGCTGCGAAAAATTCCAAATCCGAAGAGGGAGATCTCGTGTCCGTGTCGAAGCTCCTGGACAACGCCGCCTCTCAGAACCCGTTCGGAAAATATTTCAAGGACGACTTCTCGAAAGCCGCGGAGGCTCCGCGGAAGGAGATCGGGCCGCCGGGCGAGGGCTCCGAGGAGGACGAGGAGGGCCTGGTCGCCTCCGGCTCGGCGAGCGAGGGCAACAACTCCGGCAGCGACGAAAACAAATCGGAATCCGAAGCCGCCGTTCAGGCGCCCCAGAAGAAGAAGTCGGCTTACAGCCTCGCTCCCAACAGGGTCTCGTGTCCCTACTGCCATAGAAAATTTCCGTGGTCGTCGTCCCTGCGGCGCCACATCCTGACCCATACGGGACAGAAGCCGTACAAGTGTCCGCACTGCCCGCTGCTCTTCACGACCAAGTCGAATTGCGACCGCCACCTCCTGCGCAAGCACGGAACCGGCGCCCAGCAGACGCTCCAGAACTCTTCGGCCGTCGTCGCCGACCCCGCCGCCGGCGTCCCGATCCCGGAGCTCGGCAACCAGGGCTTCATGATGAGAAACGTCCCCGAGAGGCCGTACAAGTGCGCCAACTGTCCGAGCAGCACGTTCTCGACCCTGAGCAATCTGAAGAAGCACATGACGTCCAAACACGGAGTCGATCTGGACTCGCAGCCCGACAGCCCCGGGGCGGACGGGACGAATTCCCGGAGAGAGAGCTGCGAAAACGACCGCGCTCTCGCTTCGGACGACGAGAAATCACCGAAGCGCAACGACGCCGAGACGGAGAGGCACGACGGCCACGGGGGAGACTGGGAAGCGCAGATCTCCTCGTCGAAGTGCAGCCCTTCGCACCCCCACGACGCACCGTCTAACGTCCAAAACTCCGACTTGCCGTTCAAATGCCATCTCTGCGAAGGATCGTACGCGGAACGACAGGCCGCTCTGGATCACATAAGAGAGTCCCACGAGTCCGAATACGAGCTCCTGGTCTGCAAGGGCGCTCTGGAGACGGGGATCGGTCTCGGAGACGACCTGGGCCTGTCCGGACACCGCAGCGAAGGCGCTGAAGACCAAGGAAGCGAAGAAAACATAGAATCGCTGAGAGGAAAATTTCCAGACTACGCGAACAGAAAGGTCGTATGTGCGTTCTGCATGCGTCGATTCTGGTCTGCGGAGGATCTCCGGCGCCACATGCGCACTCACACCGGCGAGAGGCCTTTCTCCTGCGACGTCTGTCGGCGCCGCTTCACCCTCAAGCACTCCATGCTGCGTCACAGGAAGAAGCACTCCGCTCCGGACAGGAGCGGCGAGGACTTCACCGCCGGCAGCGGCGACGAGGACGCTCCGTCTCCGGCGGCCCGCGGCAACGGGGGCGCTTCGCCCTCGTCCAACGCCTACCACTCTCATCCGAACGCCTCCACCCCCGCCTCGAAGGCCTCCCGCCTGAGCGTCCTCAACGCCTATCAGATCGCCATACACGCCAAGAATCTGTCCGCGAGCCCCGAAATACCCAGCAACGTGAACAACAACAACTCGCCGCCCGCGCAGACCTACGACGGAAAGCTCAAGCCGCTCGGCAGGAGAGACCTCAAGTCCGGCCACAGGACGAGATACTCCAGCGAGGACAACGACGCTCAGGAGAGCGAGGTCGAGTCCGGCGGAGACCTCATCGGGAACCTCCTCGGCATCAGCGACAAGGGAATGATCAACAAGCTCCTGTCGTCTCCCGACGAGGCGGCCAAGCTTCTAGGAGTCAACAAGTGA
Protein Sequence: MQDMSCLISEPANSPPRVLRSDVTLEKSCTDTKDRKTKIMPKTLRNHHRESPIEKKKPSTVAKNCEDPKSSAEDTDSAGTSSEKNRKSQEILLKDTKNEKYTCKLCDRVFSTIAASERHSLSHQNEKSFKCKMCDLTFSTNGAMHRHMRTHKASQYSDSDDSAKDDSEGSGELRHAGSETPRTSRKRRSEHNNNGSTDNSAEEESSTLKKRTKTINNNVISEIKLTCPVCEREDFASLNVLETHMEEEHPDYQFKCVTCSLSFKNHRALNLHRFMTHHSTLKKLANSVSGFGDCTFIDFSSQKFPEIAKTVCEKSVHKSVTEQTFRCKYCSRDFPCESALEIHANNCGSDDARSPADNQDWSESCDTAENVRRDDFFANLDLQNKSPDSEQRRFSTELSKTKIQNSFRSPRDARNIIDSQKDLADIQSILSVTSTGSLLEQLTQKARDHMPKDQEPEEMQDVFAAEFRKMKLRGEFPCRLCTAIFPNLRALKGHNRVHLSGNGAGPYRCNMCPHSSLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHSKITREDVKRSIIYHPSEDPNNDEMNSKLNISRDEIKRTPMYASADVDHRDDAIDRIKNERSTPISHFPRDIVNFAEHALPIPIPRDLSIVIPQPRDVLKNHCIAEPTNDSAPKADEGCQPRIKVKGYSQLTQIPEFSESDNEKDNYSDEEIDPAEDARPIKPAIYSTETPMDLSTGECQDDVLDLSKKRDSRSDDRPSMDSDQDEYLPKTLEFNNNTAIAASVLEKTQQLLFARQQQLMKFPKLDPTANFYATQLSQLYQRAGVPFSGLGLPPAFPLNPYFLQPNPFLAAAGNPQNVAEMNERIQKEIIRGLQLSGGGLVGVETNKLVSNMVLANERFQALQQQHQAMNGIGGADLKSHAPNSIVKTEDDVESQQLHVSVDPPTVVPYAPVASSPAIASPKAQRKETASNQSPNSVKMVIKNGVLMPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQYWSQRQRSTIGSVPRKNPISMVPQSMAVPQGISLNYDARFGYLKSVHGETGTDAQESDRKDGSPARASSINRSPISDHVKYAILAQQLKSQNPSSHSDDLKNRMETIANGDNEEEDEEDALIIDEETVDDGSQPSGQLQPKRAAEASRDQNLLAKRVARDILTAARSQHDVSKDFDWKIAGNLINKNLANRNADIPTFVSQIGSDGAEESRANDGAAKNSKSEEGDLVSVSKLLDNAASQNPFGKYFKDDFSKAAEAPRKEIGPPGEGSEEDEEGLVASGSASEGNNSGSDENKSESEAAVQAPQKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHILTHTGQKPYKCPHCPLLFTTKSNCDRHLLRKHGTGAQQTLQNSSAVVADPAAGVPIPELGNQGFMMRNVPERPYKCANCPSSTFSTLSNLKKHMTSKHGVDLDSQPDSPGADGTNSRRESCENDRALASDDEKSPKRNDAETERHDGHGGDWEAQISSSKCSPSHPHDAPSNVQNSDLPFKCHLCEGSYAERQAALDHIRESHESEYELLVCKGALETGIGLGDDLGLSGHRSEGAEDQGSEENIESLRGKFPDYANRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDVCRRRFTLKHSMLRHRKKHSAPDRSGEDFTAGSGDEDAPSPAARGNGGASPSSNAYHSHPNASTPASKASRLSVLNAYQIAIHAKNLSASPEIPSNVNNNNSPPAQTYDGKLKPLGRRDLKSGHRTRYSSEDNDAQESEVESGGDLIGNLLGISDKGMINKLLSSPDEAAKLLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -