Stie007433.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- -
- Assembly
- GCA_008973525.1
- Location
- Contig239:124450-132265[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0011 0.063 13.5 0.3 3 23 208 230 207 230 0.96 2 11 0.038 2.3 8.6 0.3 1 19 236 256 236 262 0.94 3 11 0.022 1.3 9.3 0.2 3 23 315 337 314 337 0.95 4 11 2.8e-05 0.0017 18.4 1.8 1 23 343 367 343 367 0.98 5 11 0.001 0.062 13.5 6.5 1 23 375 399 375 399 0.95 6 11 0.0048 0.29 11.4 0.1 3 23 409 432 407 432 0.92 7 11 6 3.6e+02 1.7 0.2 1 10 439 448 439 461 0.83 8 11 0.00017 0.0098 16.0 0.9 3 23 470 492 469 492 0.93 9 11 0.00034 0.02 15.1 0.2 1 23 498 522 498 522 0.97 10 11 0.0009 0.053 13.7 0.6 1 20 530 549 530 552 0.93 11 11 0.0018 0.11 12.8 1.7 1 23 558 583 558 583 0.96
Sequence Information
- Coding Sequence
- ATGCAAAACATCAGGAACCCTAAGAGCGCTTCCGCTGTATCAGCGGAAAACAAAAAACCTAATATTCTTCGAAGAAGGGCAGCTTTCCGCCCTTCTAGTCCGATCGGTGAAATATCGGGAGGGAGGTCGCTCTTGACTCCGGAAAGCTTAAAAAAAACAGATCCCTCTCGCACCGAATGTAACATAAAAACAAGCAAAGAACACAGCGTCAACAACAAGGAAACTAAAACCTACGCCCGTATACGCAAACCGCCGCAAAAGATCATCCTCGATTCCTACGTATGCGATAAAAATAGAAAATCTCTCGAAAAACCCGAAACGAACGTCGTTTCGAGCGCCAACAGACCGGTTACTTCAGCGATCACAAATACATCGATGCCCGTTCAATATGATGAACTTTTACAAGATCAATTCATTGTCGACGGTTTAACTGAAGATGATCAGGGGAAAAATGGAGAATCATCTGATTTACCCACCGATGGAATTCTTCAAAGAAGCAGTGAGATAGTTCTATCTGGTGAATTAAATAGGGAAGAAGTTGTAGCAGCTCTCGAATCGGGGGGGTTGGGTGAAAAGCAGCTACTAGTAGGAGAAGGCTCGGAACAGCAATATTTTTGGTTGTGTCCAATCTTCGACTGCAATAAATTGTATAGTGATAGATCTGCTTTACATGTACATATTCTCATACATTTTGATCTCAGTTCTTTTAAGTGCAATGTAGAAGGATGTTCTCAAGAATTTATTAGCGAAAATCAATTAAACCAACATAATCTCGATACAAATCATAAAGAATTTATCATTCCCACCGAAGAATCATTCACACAGCAAGAGGAAAATTCTGAAGGACCCCGTCAATTAGTCGATGCTGCTCTTGCCTCTGTAGGTATTACAGAAGACCAAATAATTTCAGTCACGATTCCAGAAAGCGGTCGTCGGTGGCTCTGCCCCTACACCGGTTGTGAATTAAATTTTAAGACACAGTATATACTTAAGAATCACATTTTGATGCACTATGATCTCAGACCGTTTAAGTGTAGTCACGAAGACTGTGGATGGGCTTTCCGTTCCTTGTATAAGTTAAAGAATCATACCAATGTTCACGGAGCACGTAGCAGCGGACGACACGTGTGTACGTTTCCAGGATGTCATAAAACCTGCAGTACCAAATACAATTTATCTGCTCACAAACGATTGCACGAAAGATCACAAGATCGTAGATTGGCCTGTCCGGCCAAGGATTGTACGCGTGTATTCCAAGTACGATCTCAGCTGGAAATCCATCTCACTAACGATCATGTACCGCAGCAAGCGCCTCACAAGTGTGGCTCTTGTAGCAAAAGATTTTGGTGGAGCACTGGTATGGCAGCTCATGCTCGTGCACATGCAAACGCTCCCGGTGAGCCTGTATGCTCGTGGCCAGGTTGTGGTCGTCGTTTTACACAGCCCTGTCGATTGCGCTATCATATTAGATCGCACACTGGCGATAAACCCTATAGATGCACTTTTCCATCGTGCAATTGGGCGTTTCCATCGTCGGGAAAACTGCGAAGGCATGCTCGTGCACACGGTGGAGACGTCGAACGTAGATATGTATGTGAAACGTGCGGACGGGCTTTTCTTCGTTCTGAGCATTTACGTGAACATCTTCCGCGGCATCTACCACACCAAAATCATCAGTGTGATTATCCAGGTTGTGATCAAAATTTTTCTAATAAAAGTACGGTATATGCTCATAAAAAAAGGGATCATGGTATTGTGTCTGGACAAGGAAACTCAAATCATAATCAAGAAATTCAAAATAATTCTCAATTGGAAAATTCTTCCGACTTTATACAAATGCAGGAATGCGAAGAAGAAATATTATCTCTACGAAGTGCTCGAACTCATGTGCCTTGGGGAAACCCAGAAACCCCCCATGAACCCCAAACAATTCAATCTTTACACGAGGCTGATATTTTGCAACATTGCAACAGTTGTGATGAAAAGCAGGGTAATCCTTTGGTTTGTGGGGGACTAGGCTTGGAAGGGGAGGGCCCAGTAGAGGGTGCAGGGTTATCTTTGGAAGGCGAGGGAGCCGGAGTCAGCGGCCTACCGGAACTGGGCTCCGATCTCCTCGGTCCTAGCAACGATCACATTAATAGCTTACTGTTACAGGAAGAATTGCCCGACGGAATGTTGTACGCAACCGAAGAAGATACTGAGCTTCATGTTCTTCTTCTTAGTGAATAA
- Protein Sequence
- MQNIRNPKSASAVSAENKKPNILRRRAAFRPSSPIGEISGGRSLLTPESLKKTDPSRTECNIKTSKEHSVNNKETKTYARIRKPPQKIILDSYVCDKNRKSLEKPETNVVSSANRPVTSAITNTSMPVQYDELLQDQFIVDGLTEDDQGKNGESSDLPTDGILQRSSEIVLSGELNREEVVAALESGGLGEKQLLVGEGSEQQYFWLCPIFDCNKLYSDRSALHVHILIHFDLSSFKCNVEGCSQEFISENQLNQHNLDTNHKEFIIPTEESFTQQEENSEGPRQLVDAALASVGITEDQIISVTIPESGRRWLCPYTGCELNFKTQYILKNHILMHYDLRPFKCSHEDCGWAFRSLYKLKNHTNVHGARSSGRHVCTFPGCHKTCSTKYNLSAHKRLHERSQDRRLACPAKDCTRVFQVRSQLEIHLTNDHVPQQAPHKCGSCSKRFWWSTGMAAHARAHANAPGEPVCSWPGCGRRFTQPCRLRYHIRSHTGDKPYRCTFPSCNWAFPSSGKLRRHARAHGGDVERRYVCETCGRAFLRSEHLREHLPRHLPHQNHQCDYPGCDQNFSNKSTVYAHKKRDHGIVSGQGNSNHNQEIQNNSQLENSSDFIQMQECEEEILSLRSARTHVPWGNPETPHEPQTIQSLHEADILQHCNSCDEKQGNPLVCGGLGLEGEGPVEGAGLSLEGEGAGVSGLPELGSDLLGPSNDHINSLLLQEELPDGMLYATEEDTELHVLLLSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -