Stie010502.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- -
- Assembly
- GCA_008973525.1
- Location
- Contig094:4313526-4319777[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.014 0.85 9.9 4.7 2 23 279 300 279 300 0.98 2 16 0.023 1.4 9.3 1.1 3 23 308 328 306 328 0.95 3 16 0.00026 0.015 15.4 7.6 1 23 334 356 334 356 0.98 4 16 1.3e-06 7.5e-05 22.7 3.3 1 23 362 384 362 384 0.98 5 16 0.013 0.78 10.1 4.6 1 23 390 413 390 413 0.94 6 16 0.0076 0.45 10.8 1.6 1 23 419 441 419 441 0.97 7 16 0.052 3.1 8.2 0.3 1 23 447 470 447 470 0.97 8 16 0.013 0.75 10.1 1.8 1 23 476 498 476 498 0.97 9 16 0.037 2.2 8.6 2.8 2 23 721 742 720 742 0.96 10 16 2.3e-05 0.0014 18.7 5.2 1 23 748 770 748 770 0.98 11 16 0.00031 0.019 15.2 3.2 1 23 776 798 776 798 0.98 12 16 0.029 1.7 9.0 2.5 1 23 804 827 804 827 0.94 13 16 0.0026 0.16 12.2 1.9 1 23 833 855 833 855 0.98 14 16 0.0058 0.34 11.2 0.1 1 23 861 884 861 884 0.95 15 16 0.0015 0.089 13.0 1.6 1 23 890 912 890 912 0.98 16 16 0.0053 0.32 11.3 9.6 1 23 946 969 946 969 0.98
Sequence Information
- Coding Sequence
- ATGACGGTGTGCCGAACTTGTTTGGCAGCGGTTTCTCGCTATCGCTCGCTTTTCGATGCCCTCGAAGGAGACGATCTGCCACTTCACGAGATGGTCGTAGCCATCTGCTCTTTTCAGATAGAAAAAGGTGATGGACTGCCATCAAACATATGTAATAAATGCTGTAGAGAAGTTAAAGAAGCCTATGTATTTAAGAAGAAATGCGAAAAATCTGATGATATTTTACGAAAAAAACTTGCGCGGGATGATGATAATTTATTCATGAAACTAGAAGAGAACTGCTTGTATTTAGAAAGCATCGATACATGTACTTATAATCCTGAGGAAGTTATAATAAAAAAAGAAATCGATGCAGATCTCCTCAACTGCATTCTTGAAGAGGGCGTCAATGAAAAAGCAGATATAGAAAGAATCTCGAGTATTAAAGAAATATGCTTTGTTCAAGATAATAATATAAATGATCCCATTTCAATTAGTTTTGATACTGTTAATATTATGAAGAGTGAAAGTCAAGTAGAATTAAATAGTTGTATTATAAATGAGATTGAACAAATCGATGTTGACATTCCAGAAGTAGCTAATACAAAAACACCAGTAGAACACAACGTTCTGTCAAAAGAAAGTGAAAATAACTCGTTAATAGATTTAGATACGTATAATACTTTAAATAACACCAAACGAAAAATGAAACCGATATCGAATAATTTAAAATCTTTGAAGAAATGTCATAGTTACAAGATATCTAAACGAAAAAAGAAAATAGATCGCTCTTTCGATAAGTGCGAAGATGAAATTGATAATATTATAAATAAGCATAAAAGATCGTTGTTCAGACAATGTTCATTTTGTGATTTTAAAACAAAATTTCCTTCCAAATTAAAGCTGCACATGCATACACACACAGGAGAAAAACCATTAGCATGCGACAGTTGCAGTTTTAGATGCATTCAACCCTCATCTTTGCAAAATCACAAGTTAATACACACCAATGAAAAGCCCTACAGCTGCTGTTTCTGTGATTATAAATGTTCGAATTCATCTAGTCTCAAAATACATATGAGGAGGCACACTAATGAAAAACCTTACTCGTGCAATATTTGCTCTTATCGCTTTACACAGTCGTCGCATCTCAAAGTGCATTTAAAAGTTCACTCTGGGGAAAAGTCGTTCCTTTGTGATGAATGTCATTACACCTGTCGATCGGAATCAAATTTGGGAATTCACAAAAGAAACAAGCACTCTCAAGAGAAAAAATTTTCATGCGATGAATGCGATTTTAAAACAAAAGCAAAGAGCACTCTGATGATCCACAAAAAAAATCATGCAGGCATAAAGAATTTCTCGTGTGATTCTTGTTCTTATAAATCCATACAGTTGGTGGCTTTAGAAAACCACAAGAGGATGGTACATACGGGGGAACGGCCGTTTGCTTGCGACCAATGCGCGTACAGATGTGTCAATGCTACTTATTTAAAAGTCCATAAGCAAACGCATCTCACAATTAAACCAAATGACGGTTTTTCAGAAAATATTTGTTGCCATTGTTTAAAAGAAGCTAAAGGAGCGTTCGAGTTCAAAACAAGATGTGAAAAATCTGATATTACTTTAAGACAAATGCTTTCAGAAAATAGTACTGTTATTAACGTAGATATTTCAATGAATTCTCAAATAGCATCCGCTACAAGTAATATTGATGAATGTATAAAAAAAGAAATCGAAGCTGTGAACTGTGATTCAATTTCATTGCATAATGCAATAGATTTCCAACAATTTCATGAACATTCAATTATTGCAATAAAACAGGAAACTAATTTAGAAGATAGTTTAGAAACAAGTTCTAAAAGTCTTGTAAAACATGAATTGAATAATGGATTTGTATTTTGTTCAACGAATGAAAAAGAAAGCTCTACTGTTGATTATGAAATTTCCAAAACAGAATTGATCAATCTAGAAAATATAACGCCATTTGACGATACAAATGATAATAACAAATTCAAAAAACAATCACAGCAGAAGAGAATTAAAAGAGATGCCAGTAAAAAATGTAGTGGTTCTTTAAAAACTACTTTAAAATCTTTGAAGAGAGTCGAAAATATAAATTCTTTATCGAAACTAAAAAAAAATAAAACAGCATTATTATTTGTATCTGATAAAATGTTAACATGTGATTTTTGTAGTTTTAAATGTATCAAACTATCGTCTTTACAAACTCATCAATTAGTACACAAAGTAGATAAACCGTATAAATGTATTTATTGCGACTATAAATGTTCAAACTCTTCCAATCTTAAACGTCACATAAGAAGACACACAAACGAGAAACCGTATTCATGTGACACTTGTTCGTATCGATGCGCTCGCTTATCATATTTAAAGGAACATCAACGAATCCATACGGGTGAGAAGCCATTTCTTTGCGACCAATGTGATTTTATCTGCAGTACAATGTCTGGCTTAAGGATTCACAAAAGAAATAAACACTCTCTGGAGAAACCATTTTCCTGCGACGAGTGTGACTTTAGGGCCAAAACAAACAACGCGTTAAAAACGCACAAGAAAAAACATTCCGGCGTTAAAGATCACGCTTGCAATTTATGCCCTTATAAGTCCATTCAGCTGGCCGCTTTGGAAAATCACATAAAAATGGTTCACACCGGTGAACGACCGTTTTCTTGCGATCAATGTCCTTACCGATGCGTTAATGCCGGCTATTTAAAGATCCATAAGCAGTCGCATCTCACCGTCAAGACCTTTTCTTGCGATGAATGTCCTTATACTTGCCACACTAAATTTAAATTAAAATGCCATAAATTTACTCACACCGGAGAAAAACCTTATCATTGTAATTTGTGCAATTTTAAATGTGCACATTCTTCCACTTTAAAAAGACACCAAAGACGAAATCATGTGAATATTTAG
- Protein Sequence
- MTVCRTCLAAVSRYRSLFDALEGDDLPLHEMVVAICSFQIEKGDGLPSNICNKCCREVKEAYVFKKKCEKSDDILRKKLARDDDNLFMKLEENCLYLESIDTCTYNPEEVIIKKEIDADLLNCILEEGVNEKADIERISSIKEICFVQDNNINDPISISFDTVNIMKSESQVELNSCIINEIEQIDVDIPEVANTKTPVEHNVLSKESENNSLIDLDTYNTLNNTKRKMKPISNNLKSLKKCHSYKISKRKKKIDRSFDKCEDEIDNIINKHKRSLFRQCSFCDFKTKFPSKLKLHMHTHTGEKPLACDSCSFRCIQPSSLQNHKLIHTNEKPYSCCFCDYKCSNSSSLKIHMRRHTNEKPYSCNICSYRFTQSSHLKVHLKVHSGEKSFLCDECHYTCRSESNLGIHKRNKHSQEKKFSCDECDFKTKAKSTLMIHKKNHAGIKNFSCDSCSYKSIQLVALENHKRMVHTGERPFACDQCAYRCVNATYLKVHKQTHLTIKPNDGFSENICCHCLKEAKGAFEFKTRCEKSDITLRQMLSENSTVINVDISMNSQIASATSNIDECIKKEIEAVNCDSISLHNAIDFQQFHEHSIIAIKQETNLEDSLETSSKSLVKHELNNGFVFCSTNEKESSTVDYEISKTELINLENITPFDDTNDNNKFKKQSQQKRIKRDASKKCSGSLKTTLKSLKRVENINSLSKLKKNKTALLFVSDKMLTCDFCSFKCIKLSSLQTHQLVHKVDKPYKCIYCDYKCSNSSNLKRHIRRHTNEKPYSCDTCSYRCARLSYLKEHQRIHTGEKPFLCDQCDFICSTMSGLRIHKRNKHSLEKPFSCDECDFRAKTNNALKTHKKKHSGVKDHACNLCPYKSIQLAALENHIKMVHTGERPFSCDQCPYRCVNAGYLKIHKQSHLTVKTFSCDECPYTCHTKFKLKCHKFTHTGEKPYHCNLCNFKCAHSSTLKRHQRRNHVNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -