Stie013879.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- -
- Assembly
- GCA_008973525.1
- Location
- Contig543:260335-270265[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.9e-06 0.00017 21.6 1.9 1 23 192 214 192 214 0.99 2 15 0.18 11 6.5 0.3 1 21 267 287 267 288 0.91 3 15 0.0056 0.33 11.2 0.5 2 20 307 325 306 327 0.93 4 15 0.43 26 5.3 0.3 2 20 371 389 371 391 0.92 5 15 0.0074 0.44 10.8 1.9 2 23 402 424 401 424 0.95 6 15 0.0001 0.0061 16.7 1.5 2 23 447 468 446 468 0.94 7 15 8.4e-06 0.0005 20.1 3.2 1 23 487 509 487 509 0.98 8 15 0.00045 0.027 14.7 3.2 1 23 525 548 525 548 0.98 9 15 1.6 93 3.5 2.8 2 23 571 592 567 592 0.94 10 15 0.012 0.73 10.1 1.4 1 23 603 625 603 625 0.97 11 15 0.014 0.85 9.9 3.0 1 23 678 700 678 700 0.97 12 15 0.0018 0.11 12.8 4.6 1 20 731 750 731 753 0.95 13 15 1.9 1.2e+02 3.2 0.5 2 10 768 776 767 780 0.90 14 15 0.00013 0.0078 16.3 0.5 2 23 798 820 797 820 0.96 15 15 6.8e-05 0.004 17.3 1.6 3 23 902 923 900 923 0.94
Sequence Information
- Coding Sequence
- ATGGCGAGCTTGGCCGCGCTGAGCAAGTGCCGGCTGTGCCTGAAGCTCGGCGATTTCTATTCCATCTTCGCCGCCGACAATTCAGTACAGCTGGCCATGATGGCCATGGCCTGCTCAGACGTCAAGATATACGAAGGAGATGGTCTTCCCGATAAAGTATGCGGGGAATGTGTGGAAAAGTTGAGTGCTGCTTATATTTTCAAACAACAATGTGAACGATCTGATGTTGAGCTTCGGAAAGCATTAAATACATCACATACCAATGATTCATTTTCCGGCCGTAAAAGCACTGAGCTGATAAATTCTCAACGAGTTGAAAAATCAACACCCTTAAGAAAATCGCAGAGGGAGTCTGCAGGAAAGAGAAATTACAAAGAAATCGACGATTCGAATGATCCATTGCATTTATCTTACCCACAACCGAGCGATTTGCTAGAAGAAAGATACAGTGTATTTGTACCTAACACGTTATCATTAGAAGGAACACAATTGGGAAATGGACCTAATATAAAAAAGCGTCGATTATCTGAATCATCAAACTCGACCCAAGCTGCAACCACCCCAAAGGAACCTTACGAATGTAAAATTTGTAATAAAACTTTTACAAATTACAGAAGCAATAATGCACATCAAAGAGTTCATAAAGCTGAAGCTTTGGAAGGAGAATATGAACCGTCTTCAGCTGCTCAGACTTCAAATGCTGATAACCTTTCGCAAGAAGAAGACGACGAAGAAGAGGACGACAATTACAACGATGAAGATTATTCAAACAATTCCGCATCTCACGAAAAAGAAAAGTTTAGGTGTCCTTGGTGCGGTCGACAAAATACCAATAAAACTTTATTTTTAGATCATGTCAAACAATGCAACTATGACGGTAACTCTTCTGACATAATCGAAAAGGCCATACAGGAACTATCATGTCCAATTTGTCTTAAGAGATATAAAAAAAAATTGTATCTCAGAAAACATCTCGGACGAAGTGCTTGTGGCGTAGCCTTTAAACATTATATTCAACGAACGTCGACTCAGAAAGTGGACGCAGGCAGACTAAACATAAAAGATATAGCCGACGAAATCGACAATATATTATCTAAAGTGCAACACGCTCAATGTTCAAATTGTGAAATGCAATTCAGATCTTATGTGGCGATGCTTAAGCACTTTTTAAAATGTTTGGATACGCGTGGAGTTGTGAACATACGATGTATGTCGTGTTCCATTGACTTTACTAATAAGAAATCATTTAGTAAACACATCAAAATGACTCATATTCTTGCAAACCACCCACCAATACCAATTAAGGAAGAGAGGACCAAAGAGAAAGATACTACACTCAAATGTCACAAGTGCAACAAAGTTTTCGAAAATCAAACGAAACTCGTCATGCATTTGGCTGCCCACATGGCAAACATAGACGACAACTCCAAAGTCACTATTAAAAGAGTGTCGTTGCCATTCAAGTGTGTTAAATGCAACAAAAAATTCAGATACAGAGCATCTTTAAGAAATCACTTAAAAATTCATATGAATTATCCTTATTCTGGCAACAGCGACGATGAAGGTAATCCTCACAAATGTGATTTATGTTACAAAGGATTTAAATACCCTAAATCTCTTCTTATGCACAAAAGAACTGAACATTTAACTATTCAAGGTCCTACCGAAGATGCCCCGCGACGTGGTGTTCAATTTTCTAAATGTCCAGTCAAATGTTTACATTGCAACGTCATGTTGGGAAACAAGTACGACGTCAAAATGCATAATAAAATGCACATCGATAATAATACGAAAGTGAAAAATGAATACACGTGCCTCGGTTGTGATTTAAAGTTCACAAACACGAAGATATTCCGAAATCACATTAAAGAACATAATTGCGGCGACGAAGTCGATAATGATGATACAGTATACGACGCCAGCATATCCAATTTCTGCGAGGTCACAAGCGACGTAACGAAAGATTTTGAAAATGAACTCGAAATAAAACCAGTCAAAGAAGAAGAACAACCCATTGTGACTTTGAGCGGTTTCAATTGTACCATATGCAATGAAAAATTGGCCTCGTTGAAACAATATCACCAGCATATGAGCAAACATGTCAAAATAAACAAATCTGAGAAATTGTCATGCTTCGTATGCCATTCGACTCATACAATCAGTGTCGTTGATTTGCCCGAAGGCAGTAACTTTAAATGTGACATATGTCAAAAGTTTTTCAATTCGAATAAATCTCTCAAATACCACGTTATTTGCCATCAACAAGGTGAAGATTTCCAAGGTGATAAAGTAGAGAATGTTAAATGTACTATGTGCGACAAAGAATTTTTGACTAAATACCGTCAGATGGCAAGGTATCCTAAAACTAAGATAAAAAAACCAATCAAAATTCCATGTCCCGTATGTGATTTGATGTTTATGACGCGTCCTGGTCTAAATAAACATCTGAGAAAGTGCCATCCTGTAAATAAAATGGTGAAGAGAAATGATCCAGACGAAAAGGATACTAAACCACATGTTTGTATCTTATGCATGAAAGAATTTTCTACTGAAGAAAGTCTCAAATTCCATCTTGCAGCGCACAACCGAAAACCTACGCTTTTTAAATGTTCTCTTTGTTTCAAAAAGACATTTTCGTTGAAGATGCACGAAATTCATTTAATGCGTGCGCATCTCCTTCAGCATCAGAAAGAACCGTTAGATTGCGACCATTGCGATGAGAAATTTTCGCGCAGACAAGAACTCCGCATGCACCTGCAGAACGAGCACTGA
- Protein Sequence
- MASLAALSKCRLCLKLGDFYSIFAADNSVQLAMMAMACSDVKIYEGDGLPDKVCGECVEKLSAAYIFKQQCERSDVELRKALNTSHTNDSFSGRKSTELINSQRVEKSTPLRKSQRESAGKRNYKEIDDSNDPLHLSYPQPSDLLEERYSVFVPNTLSLEGTQLGNGPNIKKRRLSESSNSTQAATTPKEPYECKICNKTFTNYRSNNAHQRVHKAEALEGEYEPSSAAQTSNADNLSQEEDDEEEDDNYNDEDYSNNSASHEKEKFRCPWCGRQNTNKTLFLDHVKQCNYDGNSSDIIEKAIQELSCPICLKRYKKKLYLRKHLGRSACGVAFKHYIQRTSTQKVDAGRLNIKDIADEIDNILSKVQHAQCSNCEMQFRSYVAMLKHFLKCLDTRGVVNIRCMSCSIDFTNKKSFSKHIKMTHILANHPPIPIKEERTKEKDTTLKCHKCNKVFENQTKLVMHLAAHMANIDDNSKVTIKRVSLPFKCVKCNKKFRYRASLRNHLKIHMNYPYSGNSDDEGNPHKCDLCYKGFKYPKSLLMHKRTEHLTIQGPTEDAPRRGVQFSKCPVKCLHCNVMLGNKYDVKMHNKMHIDNNTKVKNEYTCLGCDLKFTNTKIFRNHIKEHNCGDEVDNDDTVYDASISNFCEVTSDVTKDFENELEIKPVKEEEQPIVTLSGFNCTICNEKLASLKQYHQHMSKHVKINKSEKLSCFVCHSTHTISVVDLPEGSNFKCDICQKFFNSNKSLKYHVICHQQGEDFQGDKVENVKCTMCDKEFLTKYRQMARYPKTKIKKPIKIPCPVCDLMFMTRPGLNKHLRKCHPVNKMVKRNDPDEKDTKPHVCILCMKEFSTEESLKFHLAAHNRKPTLFKCSLCFKKTFSLKMHEIHLMRAHLLQHQKEPLDCDHCDEKFSRRQELRMHLQNEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -