Stie000169.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- -
- Assembly
- GCA_008973525.1
- Location
- Contig166:692179-699096[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.19 12 6.4 0.2 1 23 27 50 27 50 0.90 2 18 0.0077 0.46 10.8 0.2 2 23 79 101 78 101 0.96 3 18 1.7 1e+02 3.4 0.1 3 23 336 359 335 359 0.89 4 18 7.3 4.3e+02 1.4 3.3 1 21 367 387 367 388 0.94 5 18 0.031 1.8 8.9 1.5 1 23 397 419 397 419 0.95 6 18 0.47 28 5.2 0.6 1 23 467 490 467 490 0.90 7 18 0.087 5.2 7.5 3.3 1 23 506 528 506 529 0.93 8 18 0.11 6.4 7.2 0.6 2 23 572 594 571 594 0.92 9 18 0.01 0.61 10.4 2.8 2 23 601 623 600 623 0.95 10 18 9.4e-05 0.0056 16.8 1.6 1 23 629 652 629 652 0.96 11 18 3.3e-05 0.002 18.2 0.5 1 23 659 681 659 681 0.97 12 18 5.3e-07 3.1e-05 23.9 1.6 1 23 686 708 686 708 0.98 13 18 0.00047 0.028 14.6 3.3 1 23 714 736 714 736 0.98 14 18 5.8e-05 0.0034 17.5 1.6 1 23 742 764 742 764 0.97 15 18 1.5e-06 8.6e-05 22.5 1.5 2 23 772 793 771 793 0.96 16 18 8.6e-07 5.1e-05 23.2 1.3 2 23 799 821 798 821 0.96 17 18 0.0027 0.16 12.2 1.6 1 23 828 850 828 850 0.98 18 18 0.00065 0.039 14.2 1.1 2 23 857 879 856 879 0.96
Sequence Information
- Coding Sequence
- ATGGCGGTGAGTTGCGGGGCAGGCGCGCTCCCCGACGACTTGTGGCTGGACACCCGCACCCTCGGTCAGACGGGACCTTATCCGTGTCGGCTCTGTCGACGTTTCTTCGGCGGCAAGAATGAACTCGTCATTCACTATGTTCTCGACCACGACAAAGCCTTCTGCAACACATGCAGGTATGTCCTGAGATGTGGAACCGACTGGACAACACACCGCCTCTATCATCTGCCGCTGCGATGCTCAACTTGTGATGGAGAGTTTACAAGTGGACCAGAATTGAGAGCCCATCACAGAGTCGCCCATGGGGCGTCTTTCTGTCGTCTGTGTGATTTAGTGCTTCCCCTTGACGAGGAATATGGGAGTCATCTCCTAAAGAAACACACTGTGACTGCACTGGGTGCTGAGAATGGAGATGAACTGTGGACTCGACTTACAAACGAGGACTTTTTCTCGTGTCATTTATGCGAAGGCGAAAATTTGTCTCAGTTTAACTTTTTTGGTCATTTTAAATTTTTTCATAGACTATCTCTGAGATGTTTAATCGATCTAGTGAATGGAAGAGATAAAGGTTTTTCAGTGATAGATGAGCCTTCTTCAAATTCAAAATCGTTGTTCAAACAAGCTCCATCCGGTGAGAATATAACTTCTGAAGATCCGTCCGAGGATAATTCTTCTGGGGATGATTTGTTCCCCCCTGAAGTGGATAGCGAGGCTGCAAATGAAGACGATGCACACAGTGATGATTCGTTGGAGGCTCTTAGTGTAGACGACAATGAAGGAGATGAAGTGGAAGGAAAAAATTGCCTTTCTGATCCACTTCTGGCAACAGCTCTAGCTGAATGGGGAGGAAAGGAAGATTATGATTCAACCCTGGTGGAGTTTTTTGCTGTTCGTCGACATGAAATCGACTATCTATTTGAAGACATCTCAAATGCTAACTTGCGGTATCTAACACCCGATAGTCGGATCGATATCAGAGTTGAATTGGATTTTTTGGGGAAAGATTGTCCATTCTGTCCTCCTGGGAGGAAGTTCCCGAGGCTAACGAAGCTCATTGAGCATGTTGTCAGATTTCACCTCTTGAAATACTCTCCGAACTATACTTGTCGTATTTGCATGACGAGCTGTCATCGAAGAAAGGAGATGGAGCAGCATTATCTATCAGAGGGGCTCGAATTTGAGAATCTCTACTTGTGTCAAGTGTGCGAATGTGAATTTGATTCTCGCGAATTGGTCAGGAAGCATTTGTCTAGTCATTGGGATGACCTGAAATCTCTAGAATGCACGAGTCCAGCGGTAGGACTCAAGTGTCGTTTCTGTTCTTTATTATTTTGGCACGAATCGGAGAGAGAGAGACATCACTGTCGGTCACATTACAATTCTCATCGAGACCAGTTCTATAAATGTGGCAGTTGTCATATGCTGTTTAGTGATAAGATTTGGTGGGCTTCTCACGAAGTTAAGACGCATGCAGACGATACTGAGGCATTAAAAAATATAAAAGCTCTAATCGCTTACAGATGTACAAAATGTTATCAAGTGTTTCGGAATATTGATAAAATAAAAGATCATTTCTTAGAACATCACCCGTCTGAAAAGCGTATTTATTGTGCATTCCCCAAATGTTTCTCGAGACCCTACAACAAAGTGAATTATCTAAAACAACATCATAGGATGGTACATCGAAAAGCAATAGCAGACACGGTTCCATTAAAATGTGAAATATGTGGGAGAATGAGCAAAACAATACAGGCTGCTAAAGTTCATCACATAAAGAGCCATAAAAATAAACTACGCTTAAAATGCAAAGTTTGTCAACAACATTTTTCATCGAGTAAAGATAGGAAGCTGCATTTGATCCGTGCTCATCCTGATCATTTGCCTTTTTACTGTACTGTATGTAATAAAGGATATAAAAACAAATCTGCCCTTTATAGTCATCGTACTCGAGCCCATAGCGTTAATAAAGTACCTTTTATATGCTCATACTGTAATAAGTCCTTTGCTGGTCAAGACACCTATAAAGAGCATCTGCTGATTCATACGGGACCTCGTCATAGATGCCCATTTTGTTCTCGGATATTTGTGCAAAGATCAAATTTGATTCGACATATTCGTATTCATACTGGAGAAAAGCCATATTCTTGTGCATATTGTGAAAAGACTTTTACTGATAAAGGGGCTTGTACATCACATACAAGAACACATACTCGTGAAAATCTTCACGTATGCCCAGATTGTGGTCAAGAATATGTTACGAGACAGAAGTATAAGCAACACATGCTCAAACATAGTGTAAATAAAGAGGCTTTGACATGCACTGAATGTCGGAAAGAATTTGCAAACAAGTATAATCTTCAGCAGCATATGAAACTTCATGGCACTGATACACTAGAATGTTCAGAGTGTGATAAATGTTATTCTTCACAATATGCTTTAAATAATCATATTAAAACTGTGCATAAAACAAAGCCAATTATTTTCACTTGTCCATTGTGTAGTTATACTTCTCGTTTTCTTGCTTCTCTTCGACACCATGTTATTACACATTCATCTGTTAAGTATCTCCAGTGTTTATTATGTAAGAAGGAATATAATGATAAAAGAGCCCTCTTTAAACATCTTCAAAAGTGGCATGAAACCAATGTAAAAGATGATAATTTTTCTAAATGTTTCAACCAACTCGATCCTTATCAGTGTAATCTTGGTTTGGATGAAGAAACCTTAAACAAAATTTTTGGACCTGATAAGAAGGGCCATACAAAAGTATTTGAACCAAAATTAAAACAACCACGAAAACTGTTACTCTTAAAAAATAGAAATATTCCATATAGTGAACAAATTTTTGAAGAAAAGTCCAAGCCTTCTACTAATCCAGAAATTAAGGAAGAAAACACCGATCAAAACGATCTAAATAGTGATTCTAAAAAAACAATTAATGAAAACAATACAAAAGATTCACAACTCGAGGAAGATACGTGCAATGAAAGCGAAGATAGTATGTTATTTGAGTCTGATAATGTGATTATTAAAAGCGAACCAATGGATGATGAATGA
- Protein Sequence
- MAVSCGAGALPDDLWLDTRTLGQTGPYPCRLCRRFFGGKNELVIHYVLDHDKAFCNTCRYVLRCGTDWTTHRLYHLPLRCSTCDGEFTSGPELRAHHRVAHGASFCRLCDLVLPLDEEYGSHLLKKHTVTALGAENGDELWTRLTNEDFFSCHLCEGENLSQFNFFGHFKFFHRLSLRCLIDLVNGRDKGFSVIDEPSSNSKSLFKQAPSGENITSEDPSEDNSSGDDLFPPEVDSEAANEDDAHSDDSLEALSVDDNEGDEVEGKNCLSDPLLATALAEWGGKEDYDSTLVEFFAVRRHEIDYLFEDISNANLRYLTPDSRIDIRVELDFLGKDCPFCPPGRKFPRLTKLIEHVVRFHLLKYSPNYTCRICMTSCHRRKEMEQHYLSEGLEFENLYLCQVCECEFDSRELVRKHLSSHWDDLKSLECTSPAVGLKCRFCSLLFWHESERERHHCRSHYNSHRDQFYKCGSCHMLFSDKIWWASHEVKTHADDTEALKNIKALIAYRCTKCYQVFRNIDKIKDHFLEHHPSEKRIYCAFPKCFSRPYNKVNYLKQHHRMVHRKAIADTVPLKCEICGRMSKTIQAAKVHHIKSHKNKLRLKCKVCQQHFSSSKDRKLHLIRAHPDHLPFYCTVCNKGYKNKSALYSHRTRAHSVNKVPFICSYCNKSFAGQDTYKEHLLIHTGPRHRCPFCSRIFVQRSNLIRHIRIHTGEKPYSCAYCEKTFTDKGACTSHTRTHTRENLHVCPDCGQEYVTRQKYKQHMLKHSVNKEALTCTECRKEFANKYNLQQHMKLHGTDTLECSECDKCYSSQYALNNHIKTVHKTKPIIFTCPLCSYTSRFLASLRHHVITHSSVKYLQCLLCKKEYNDKRALFKHLQKWHETNVKDDNFSKCFNQLDPYQCNLGLDEETLNKIFGPDKKGHTKVFEPKLKQPRKLLLLKNRNIPYSEQIFEEKSKPSTNPEIKEENTDQNDLNSDSKKTINENNTKDSQLEEDTCNESEDSMLFESDNVIIKSEPMDDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -