Stie008594.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- -
- Assembly
- GCA_008973525.1
- Location
- Contig519:1545391-1551357[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.024 1.4 9.2 0.2 1 20 425 444 425 445 0.96 2 10 0.00028 0.016 15.3 0.0 1 23 453 475 453 475 0.96 3 10 0.4 24 5.4 1.6 3 23 483 505 481 505 0.89 4 10 0.00022 0.013 15.6 0.2 1 23 511 533 511 533 0.98 5 10 1.6e-05 0.00097 19.2 1.4 1 23 539 562 539 562 0.97 6 10 0.0007 0.041 14.1 2.0 1 23 572 595 572 595 0.94 7 10 0.0015 0.088 13.0 2.6 3 23 605 625 604 625 0.98 8 10 0.00033 0.019 15.1 5.3 1 23 631 653 631 653 0.97 9 10 2.7e-06 0.00016 21.7 2.9 1 23 659 681 659 681 0.97 10 10 7.2e-05 0.0043 17.2 0.1 1 22 687 708 687 708 0.97
Sequence Information
- Coding Sequence
- ATGGCGGTGTGCCGGTTGTGTTTGGCTCGACGACGAGTCCGCCATCCTATTTTTGATTCTAACGCTGGATTACTTGCTAAAATACACGCCTGTTTACCACTTCAACTATCTCAAACTGATAGCTTACCAAAAAAAATATGCGAAAGTTGCATATTAAAAATTAATGATGTTTACGATTACTGCAATAAAGTAAAAAATGCCGAAAAAGAACTTTTATCAAATTCTCTATTACTCGCAAGCTCAATCGATTGTGAGAATACAATTTCTGATGACGAAAATGATGATTATTATTCAAAGCTATCTCCGTCTCGTGAGTCATCTAATAATGAAAAGGCAGTCCAAGATATCAAATTTAAGCGTCGCAATGAAATTCTCATCATAAAAGAGGAACCCCCAGAGAATGATTTGTCTCCAGCAATTTCTAATAATTTGCAAATGAAAAATATAAACACTGTAATAAATTTAATAAAGCATAGTAAATTTTCTTCAAAATATACGCAAACAGATCTCTGCGAGGTTTTACACGTAGAAAATCAGCCGGAGGACATTAGAAATAAAAGCTGCGAAGTAGACAGAAAAATCCAAATAAAAGAAGAATTCTCCGAGTGCTTATCGGACAATCTGAGTGAGTCTACTGCAGAGTATCAAACGGTCGACGTCAATCAATATAGCTCCGAAGACGACCTTACACTTAATAATGTTATAAAAATTCCGCCAATTAAGGTCAAAATAAAAAGAGAATATTCGGATTCCCTCTCGATTAAAAATAAGAAATCGAAGAAAAGAAAGAAACAACTGGATATAACCTTGCCGGAAAAGAAATCGAGAGGCAGACCCAAAGGATCACTCAATAAAAACCGTATTCATAAAACAATAGAAAAAAAATCCAAAAAGCAATTGAAATTAATCGACAACTGCGACCCCGACTTGCTTATTAAATCCGAAAATATGGATTTAGAATACGGAGATAATTTGAACGAAAACGGTTTTAATGAAGTTCAAGAAAACGTCGAAAAATCCGACGATAGTAAATTATGGCAATGCTTAACGTGTTTTATTTATGAAAAATCCAGAGCGGATTTATTACAACACTACAAAGATCACGTCGAAAATCCGACTAAAATACAATTGAACTCTAACATAAAGAACGAGCTGATTGTGAAAGACGAAGTGAAAATGGAAACGGACGATGCCAAGACTGAAATTGGAGCTGCGACAAACAACCAACCGTATATGATAGTCCAATCTAAGGAATTCAGCGATGATCCTGCTTACCAGTGCCTGAAGTGTTATAAATTATTCATAAATAAAAGGGCAGTGATCAGACATTTAGTTTGCCACGATGATTCCAGACCGTATCCATGCAATATATGCGGACGAGCTTATAAGAGAGCGTATGAAATTTTGTTGCACGGAAGGGCACACAGCGGAGTGAAAACGTTATTTTGTCGATATGACCTATGTAATTACAGTACTGTTTATCGTGGCGCGTTACTATCTCATCACAAAAGGCACGAACCTGATTATAAGTATACATGTGAGGTCTGCAATAAAGGATTCGATGTCTTAACTTGGTTTACGGAACATCAAAATGTTCACACGGGAGATAAACCATTTTCATGTGATCTCTGTGGGAAAAGTTTCATATATTCTAGATATTTATCATCTCACCGTAAAAGTGTCCATCCAGAAACGAATGTACGTAAATTATTACACCGCTGTGAAGAATGCAACGCTGAATTCCCTTATCGTAAAAAATTACAGAGGCATATAGCCCATGCGCACGGCGGAGAAAATGCACTGCATGTACTGTGCGATATATGTGGTAAACGTCTTTCGAGTAAAGAGCATTTGAAATTCCACCGAAGGATACACACGGGAGAAAAACCACACGTTTGCAAAACATGTAACAAAGGATTTGTTAAAAAATGTAATTTGAAATTGCACGAGAGAGTTCACAGCGGGGAGAGACCGCATGTTTGTTCCCATTGTGGTAAAGCATTTTCACAAAGATCCACCCTCGTCATACATGAAAGATATCATTCGGGAGCTCGTCCGTATCAATGTAATATATGCAATAAAGCGTTCGTTGCCAAAGGATTGCTGTCGATGCATCAGAAAACTTGCGTGTGA
- Protein Sequence
- MAVCRLCLARRRVRHPIFDSNAGLLAKIHACLPLQLSQTDSLPKKICESCILKINDVYDYCNKVKNAEKELLSNSLLLASSIDCENTISDDENDDYYSKLSPSRESSNNEKAVQDIKFKRRNEILIIKEEPPENDLSPAISNNLQMKNINTVINLIKHSKFSSKYTQTDLCEVLHVENQPEDIRNKSCEVDRKIQIKEEFSECLSDNLSESTAEYQTVDVNQYSSEDDLTLNNVIKIPPIKVKIKREYSDSLSIKNKKSKKRKKQLDITLPEKKSRGRPKGSLNKNRIHKTIEKKSKKQLKLIDNCDPDLLIKSENMDLEYGDNLNENGFNEVQENVEKSDDSKLWQCLTCFIYEKSRADLLQHYKDHVENPTKIQLNSNIKNELIVKDEVKMETDDAKTEIGAATNNQPYMIVQSKEFSDDPAYQCLKCYKLFINKRAVIRHLVCHDDSRPYPCNICGRAYKRAYEILLHGRAHSGVKTLFCRYDLCNYSTVYRGALLSHHKRHEPDYKYTCEVCNKGFDVLTWFTEHQNVHTGDKPFSCDLCGKSFIYSRYLSSHRKSVHPETNVRKLLHRCEECNAEFPYRKKLQRHIAHAHGGENALHVLCDICGKRLSSKEHLKFHRRIHTGEKPHVCKTCNKGFVKKCNLKLHERVHSGERPHVCSHCGKAFSQRSTLVIHERYHSGARPYQCNICNKAFVAKGLLSMHQKTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -