Basic Information

Insect: Stenopsyche tienmushanensis
Gene Symbol: -
Assembly: GCA_008973525.1
Location: Contig253:340947-346140[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.26 15 6.0 1.9 1 23 98 120 98 120 0.97

2 12 9.7e-05 0.0058 16.8 0.9 1 23 126 148 126 148 0.96

3 12 3e-07 1.8e-05 24.7 3.3 1 23 154 176 154 176 0.98

4 12 0.0028 0.16 12.2 2.0 1 23 182 204 182 204 0.99

5 12 0.00053 0.031 14.4 3.7 1 23 210 232 210 232 0.98

6 12 0.014 0.82 10.0 1.7 1 23 238 261 238 261 0.96

7 12 0.011 0.64 10.3 0.1 1 23 267 289 267 289 0.97

8 12 0.00095 0.056 13.6 0.2 1 23 294 316 294 316 0.94

9 12 0.027 1.6 9.1 0.9 1 23 322 346 322 346 0.98

10 12 0.00018 0.01 15.9 2.9 1 23 350 372 350 372 0.98

11 12 8.3e-05 0.0049 17.0 2.6 2 23 388 410 387 410 0.96

12 12 0.0081 0.48 10.7 1.2 1 23 529 552 529 552 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.26	15	6.0	1.9	1	23	98	120	98	120	0.97
2	12	9.7e-05	0.0058	16.8	0.9	1	23	126	148	126	148	0.96
3	12	3e-07	1.8e-05	24.7	3.3	1	23	154	176	154	176	0.98
4	12	0.0028	0.16	12.2	2.0	1	23	182	204	182	204	0.99
5	12	0.00053	0.031	14.4	3.7	1	23	210	232	210	232	0.98
6	12	0.014	0.82	10.0	1.7	1	23	238	261	238	261	0.96
7	12	0.011	0.64	10.3	0.1	1	23	267	289	267	289	0.97
8	12	0.00095	0.056	13.6	0.2	1	23	294	316	294	316	0.94
9	12	0.027	1.6	9.1	0.9	1	23	322	346	322	346	0.98
10	12	0.00018	0.01	15.9	2.9	1	23	350	372	350	372	0.98
11	12	8.3e-05	0.0049	17.0	2.6	2	23	388	410	387	410	0.96
12	12	0.0081	0.48	10.7	1.2	1	23	529	552	529	552	0.97

Sequence Information

Coding Sequence: ATGAAAATGAAAAAACAATTGAGGCTAGCTATGAGAGTGCGCTTTCTTAATAGAATGAGACTAGAAAAAGAAATCACTCAGCTGAATATATTTCTATCAAATTTAAAATATAACCTCATAGAAAAAAACACTAATATTACACCCAAGACGGAAAGAGATTTAATGAATCCAGAATCGTTACAGTTTCAAAACGAAAATACTATAGACTGCTCGGATAAAAATCAGAAAATTGATGATAACATGTCTTTTATATGTGCGATACCAGTTAAGAAAAATACTGATGAATTTAAATTCTTCTGTGATCGGTGCGAATTTAAATCAAGGAAAAAAGCGCCATTTGATATTCACATGAGAAGACACGTAGGTGAAAAACCATACAAATGTAACATTTGCCAAAAAGGATTTGTCGCCAAATATGAACTCAAACTGCACAAGGGGAAACATTCTAACAAAAGGACTTACAATTGTGATAAATGTGACTATTCATTTCGTAAAAAAGAATCATTGACAAAACACTTGCGAACTCATACAGGAGAAAGACCATACAAGTGTGATAAATGTAGTTATGCTGCTGCTACCAGGCATACCTTGGTTATTCATAAAAGAAGACATTCAGGAGATAAACCATATGTATGTGATCAATGCTCTTTCCGGTGCACAACGAAAGGTTATCTTAAAATACATTTAAACAAACATAAAGGAATTAAACCATTCGCTTGTGATCAATGTGACTATAGATCTGTAGATTCATGCAAATTATCAGCTCATCGAAAAGTTCGTCATAGTGGTGAAAAACCATTTGCCTGTGAAATTTGTCCCTTTCGTGCAAAACTGCGAGCCCGTCTTCAGCAACATATTCGAATTCATGGACCAAGACCATATGTCTGCCCTCATTGTGCTAGAGCTTTTACATTACGCCGTGCCTTACAAGAACATGAAGGAATTCACACAGGAAATCAACCATTTAAATGTGAAGTTTGTAAAGTGGAAAAAAGATTTACTTTGGAAGTAACATACAGAAGACACTTGGCAAGGCATCGGCTAAAATTCAGCTGCAGTAAATGTACGTATAGAACTAGTCTCAGTAAAGACTTGCGACGACATATGAAAGTACATCTAAAAAGTTCTTATCATCCAAGAAAAAAATCAGAAAAGAATCTACAATGCAATATTTGTAAATATAGATGTGCTCAATCAACATCACTGGCGAAACACATACGCTCTAAGCATTCAGAATCCCCACAGACTGCCATCGCTGTTCAAGATATCAATATGAGCTATCAAAACAATGTTCCGGCTAATATTATTTCTTCACGAGCTATTCCATCATCAACATCGACCGTGTATTCTTCAAACGTTTCATACAGTCCATATATTTTGAACATTCCCAATTCACAAAATTTTCAAACCGATACGAACCAAGAGACAATGCCTCAGCAAACTCTGAGAAATTATACACACCAACATTTGCCGGTTGATTATGCAATTCCAATGGTATCATCCCATTTGCCATATTCACTCAAGGAAGTTGGCAATTTAGTTGAAATGAAAAGTGGAAATATTCAACCATTACCCAACATAATTTATTCTTGTGATCATTGTCAATTTAAAGGAATTGATCCGCATGAATTAATACTTCATAAAAGAATTATTCATTCGAAAGGTGCTGATTTATCATATTCTAGTGGATATTATAGAACTTCTACTATGTAG
Protein Sequence: MKMKKQLRLAMRVRFLNRMRLEKEITQLNIFLSNLKYNLIEKNTNITPKTERDLMNPESLQFQNENTIDCSDKNQKIDDNMSFICAIPVKKNTDEFKFFCDRCEFKSRKKAPFDIHMRRHVGEKPYKCNICQKGFVAKYELKLHKGKHSNKRTYNCDKCDYSFRKKESLTKHLRTHTGERPYKCDKCSYAAATRHTLVIHKRRHSGDKPYVCDQCSFRCTTKGYLKIHLNKHKGIKPFACDQCDYRSVDSCKLSAHRKVRHSGEKPFACEICPFRAKLRARLQQHIRIHGPRPYVCPHCARAFTLRRALQEHEGIHTGNQPFKCEVCKVEKRFTLEVTYRRHLARHRLKFSCSKCTYRTSLSKDLRRHMKVHLKSSYHPRKKSEKNLQCNICKYRCAQSTSLAKHIRSKHSESPQTAIAVQDINMSYQNNVPANIISSRAIPSSTSTVYSSNVSYSPYILNIPNSQNFQTDTNQETMPQQTLRNYTHQHLPVDYAIPMVSSHLPYSLKEVGNLVEMKSGNIQPLPNIIYSCDHCQFKGIDPHELILHKRIIHSKGADLSYSSGYYRTSTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -