Stie002494.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- -
- Assembly
- GCA_008973525.1
- Location
- Contig349:131736-134006[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.7e-05 0.004 17.3 1.7 1 23 163 186 163 186 0.95 2 11 0.0015 0.088 13.0 0.1 1 23 192 215 192 215 0.96 3 11 0.0001 0.0062 16.7 0.6 2 23 221 242 220 242 0.96 4 11 0.35 21 5.6 2.5 1 23 248 271 248 271 0.87 5 11 7.4e-06 0.00044 20.3 0.3 1 23 294 317 294 317 0.97 6 11 2.2e-05 0.0013 18.8 0.1 1 23 323 345 323 345 0.95 7 11 6.7e-05 0.004 17.3 0.2 2 23 352 373 351 373 0.96 8 11 0.0035 0.21 11.9 0.8 1 23 379 401 379 402 0.95 9 11 6.2e-05 0.0037 17.4 0.1 1 23 407 429 407 429 0.97 10 11 0.0053 0.31 11.3 5.1 1 23 435 458 435 458 0.97 11 11 0.0015 0.088 13.0 3.8 1 23 464 487 464 487 0.95
Sequence Information
- Coding Sequence
- ATGAACTCAATATGCATCAAAGAAGTGTGTCGAATTTGTTTAAAAATATGCGATTCAAACCATCCTATTGAGAATTTTAGCAATCCTAATGTCTTACCGAAGCTATCTTTTGTTATTAACGTGGAGATTGACTTAAGTGAAAATTTGCCAGATAAAATATGCTGCGATTGTAATCTACGACTGAATGCAGCCTATGATTTTAAAAATCTTTATTGCGATTCACAGATAAAATTGAAAGAATATTTTAAATGTTTAGTAAACATTGGCTTCAAAAATGAAATTAATGCAAGTAGAGAGCAAATCGAATTAAAATCTAATTTGGAGTCGCACGCTAGCGATAACGAGAGCGATAGTTTGTACATTAGTGAAGATATTAACGATAGCGAAATCGTATCCCCGCTTTTGCTGCAGGAAAACGTTGCAAAGAAAGTCAAAAAAGCAATTAGAAAAAAATCTTTTAATTTGATAAAATTCAGGGGTAAAAAATACGATTGTAACAAATGCGATAAAAAATTCACCAATCAAAGAGTCTACATTAATCATTTAAAGCTGCTCCACGGCCTCAAAAAACCGTATAATTGCGATAAATGCAATAACGAGTACGCTTCATCCGAAGGCTTGAAAGATCACATTTCGGTAATACACGAAGGAAAACGATTGACTTGCGAAGTATGCGCCAAAGAGTTTAAATACCCGTCTAATTTTTTATCGCATAAAAAAATACACAACGATGATAAAAAACACATTTGTGAAATTTGTAAGACGGGCTACGTAAAAAAATCGGAGCTGTTTTTCCATTTTAAGAACAGTCATTGGAAATCGGGAAAAGATTTGAGCGATGACGAAGTGAATATAAATAGCATTGTGCAAAAATATCTATACAATTGTAAAATTTGCTCTATACCGTTTTCTACTGCAGTGCTATTGAGACGACACACTATGACTCTGCATGAAAATGTGCGCTCATTTTTGTGCAGCGATTGCGGAAACTCATTTTCATCGGCGGCGGGGTTGCGTTCGCATCTGTTGAGTCACACGGGGGATAAAAATTTAATGTGTCCGTTATGCGGAAAGAGGTTTACGTGGAGAGCCGGTTTGAAAAGTCACATTTCCACGCATACCGGCGTGAAGCCGTATAAATGTTCAGACTGTGGATTAGGATTCATGTCTGCTGGAGCTAGACGCGAACATTTTTTGAGACATCATAGCCGCGCGCCGTTTGCTTGCGATCAATGTCCTTTGCGTTTTGCGCGTACTCCGCAATTGGAACGCCACGCTAGAGTTCATGCCGGAGAACAAATTCACCGGTGCGATCGTTGTTCAGCTCGCTTTTCTCATAAGCCGAGTTTAACCATGCATTACAAATCGATGCATCGAACGGAATTGTTATACAAGTGTAAATTATGCACTGAAGCGTTTATGAATTGCAAGAGTCTCAATAAGCATAGAGTCAGCAATCATCCGGCCGAAAGAAGAGTGAAAGTTGAAAAACAATCTGAGTTATTGTGA
- Protein Sequence
- MNSICIKEVCRICLKICDSNHPIENFSNPNVLPKLSFVINVEIDLSENLPDKICCDCNLRLNAAYDFKNLYCDSQIKLKEYFKCLVNIGFKNEINASREQIELKSNLESHASDNESDSLYISEDINDSEIVSPLLLQENVAKKVKKAIRKKSFNLIKFRGKKYDCNKCDKKFTNQRVYINHLKLLHGLKKPYNCDKCNNEYASSEGLKDHISVIHEGKRLTCEVCAKEFKYPSNFLSHKKIHNDDKKHICEICKTGYVKKSELFFHFKNSHWKSGKDLSDDEVNINSIVQKYLYNCKICSIPFSTAVLLRRHTMTLHENVRSFLCSDCGNSFSSAAGLRSHLLSHTGDKNLMCPLCGKRFTWRAGLKSHISTHTGVKPYKCSDCGLGFMSAGARREHFLRHHSRAPFACDQCPLRFARTPQLERHARVHAGEQIHRCDRCSARFSHKPSLTMHYKSMHRTELLYKCKLCTEAFMNCKSLNKHRVSNHPAERRVKVEKQSELL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01367284;
- 90% Identity
- -
- 80% Identity
- -