Stie004490.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- -
- Assembly
- GCA_008973525.1
- Location
- Contig056:1191437-1193552[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.008 0.47 10.7 0.9 3 23 106 127 105 127 0.93 2 13 4.5e-05 0.0027 17.8 0.5 1 21 134 154 134 155 0.96 3 13 4.7e-05 0.0028 17.7 1.4 2 23 163 185 162 185 0.96 4 13 0.00048 0.028 14.6 2.8 1 23 194 217 194 217 0.97 5 13 0.27 16 5.9 0.2 3 20 240 257 238 259 0.92 6 13 0.0013 0.075 13.3 0.1 2 23 267 289 267 289 0.96 7 13 0.018 1.1 9.6 5.7 1 23 298 321 298 321 0.97 8 13 0.055 3.2 8.1 0.7 2 19 335 352 334 355 0.93 9 13 0.00012 0.0069 16.5 1.6 2 23 363 385 362 385 0.96 10 13 4.2e-05 0.0025 17.9 4.2 1 23 396 419 396 419 0.98 11 13 1e-05 0.00062 19.8 1.3 1 23 427 450 427 450 0.98 12 13 0.0068 0.41 10.9 1.9 1 23 503 526 503 526 0.97 13 13 0.011 0.64 10.3 1.2 3 23 635 655 633 655 0.96
Sequence Information
- Coding Sequence
- ATGGATTCATCAGAAGAAATAGAACAGCTGCAATTAGGACATGTTCAATTTTTAAAATCGGAACCGTCTGACCGTTTATCCCAATCCAATTTCGGTCTAGACGATCCCCTCGCTTTTGATTCGACTGAAACTGATACTAAATCCTCTGAAGAATATGCGTCCGATCTACTAGAGATAGTTCATGATCGAGCGGATGAATCTCCTCGTCTAGATTTAGAATCTCATGCACAACAAAAAAAGTCGAATAACACTAGAAAGGTACTACGAAATGGAAAAATTGAAAAGAAAAATAAAACTATTCTGCAGAGAGCTTTTTGTGATATATGCAAACGGATGTACAAAAATAATGATATTTTAACAAAGCACATAGATCAATTCCACAAGACTGGCAATCATCAGTTTCGCTGCAACAAGTGCGGAGCCGGATTTGCCAGGGAAGATGATTTCAATCATCATATGAACAACGATCCAGAATGTGGTTCTAAAAAGTGTCACGTGTGTGGCCTTGTCTATGCAGATGAGAGCAAGTTACAGACTCATTTACGCCAAAAACACAGCATTATCAGAGAAAACTATCCGTTTAAATGTCTGCAATGTGATAGAGGCTACGATAAAAGGAACAGTCTCAAAAGACATGTGAAACGCAAACACTCTTTAAGACAAGAAACTGATGATGGCTCGATTTTAAATCGTAAAGAAAAAGAAGAAAATCTGTTTTGTGTCAACTGCAAAATCAACTTTGCCAATGAAATGGACTTCAACAACCATTTGGATAGAAACGACTCTTGCAAGTTTCCAGTGTGTGAGCTCTGTGGTCGAATATATGCCAGTGTTAAATCTTGGAAATTACACATGAGAATAAAACACAAAGTGTCAGCAGACTGGTGCGAGTTCAAATGCCAATTTTGTCATTTAGAATATAAAAAATATGATAGCTTATATAAACACATCAGTCGGAAACATCCCGAAGTGACATATGCAAGTGTGGAAACCGAGATATTGAAATGTGATAAATGCAACAACAGCTTTGAATCAGAAACCGATTACAAGGAACATTTCGACTCAAATGGATTTTGTAAAACGTTAGAATGTAGGATATGCAAATTTATTTTCTCTCGCTTGAGTTTTCTACAAATCCACATGAAAAAAAAACACGGTATATTCGAACAAAATTTCAAATTTAAATTTTCCTGCCACTATTGTCAAGAAGAATTCATGAAAAAAAGTACACTGCAATCTCACATAAAAACCACACATACAGAAAGAAGAAGCGTCGTATATAAATGTCCTACGTGTGATGCAAAGTTTAACTTGAGAGATAGCCTCCAGAAGCACGTTAGAAGAAAACACGTTGTCAAACCAGATATCTCCGATTCCAGCAATCGACCTTATTGCAAAGGACGCTTTGATGAATTTGATGTACTCTCTATTCACGCTGATCAGAGTCATCAGAATGGATTAATAGAAACCAACTTAGCACCAATAGATCAATCTCCAAATAAACGATTTCAATGTAGAATGTGTCTGCAGTATTACAAAAATCTCCAAACGCTCAAATCCCATATCCGTTGGTCACACAGTATGATAAGGAAGACTTATAAGCCTAGACAAAAAAACAAGCACATTTCGTGCAACATATTTGATAACGATGCTCCTCATTCTGAATGCAAAACGACCACCCAGAACACTACTGATGGTGAATATGTAAAATTTCCGATTGAAACAGACGTTCTGATTAAAAGTGAACCGTGTGATATTAGTTCCAATTGTCAAGTAAGTACAATTGATAGGACGACGGTTACAAATGTCAAACAAAATAAGTGCGAAATTGAAGGATGCAATTTTAAAAGTGACGTTCAGAGTAATAGTCATGAAAGTGACGCTAATGAAAAACAGATGTTTTGTAATTTTTGCGAATTTAAAACTTACAATTTAAGTAATTATATCAATCACATAAGGGAACATTCAGTTGAACGTTTATCGTCCAATAAATGA
- Protein Sequence
- MDSSEEIEQLQLGHVQFLKSEPSDRLSQSNFGLDDPLAFDSTETDTKSSEEYASDLLEIVHDRADESPRLDLESHAQQKKSNNTRKVLRNGKIEKKNKTILQRAFCDICKRMYKNNDILTKHIDQFHKTGNHQFRCNKCGAGFAREDDFNHHMNNDPECGSKKCHVCGLVYADESKLQTHLRQKHSIIRENYPFKCLQCDRGYDKRNSLKRHVKRKHSLRQETDDGSILNRKEKEENLFCVNCKINFANEMDFNNHLDRNDSCKFPVCELCGRIYASVKSWKLHMRIKHKVSADWCEFKCQFCHLEYKKYDSLYKHISRKHPEVTYASVETEILKCDKCNNSFESETDYKEHFDSNGFCKTLECRICKFIFSRLSFLQIHMKKKHGIFEQNFKFKFSCHYCQEEFMKKSTLQSHIKTTHTERRSVVYKCPTCDAKFNLRDSLQKHVRRKHVVKPDISDSSNRPYCKGRFDEFDVLSIHADQSHQNGLIETNLAPIDQSPNKRFQCRMCLQYYKNLQTLKSHIRWSHSMIRKTYKPRQKNKHISCNIFDNDAPHSECKTTTQNTTDGEYVKFPIETDVLIKSEPCDISSNCQVSTIDRTTVTNVKQNKCEIEGCNFKSDVQSNSHESDANEKQMFCNFCEFKTYNLSNYINHIREHSVERLSSNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -