Stie011385.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- large2-a
- Assembly
- GCA_008973525.1
- Location
- Contig059:1143218-1177206[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00026 0.015 15.4 0.6 3 23 801 821 800 821 0.99 2 17 0.00044 0.026 14.7 3.5 1 23 827 849 827 849 0.97 3 17 0.25 15 6.0 1.3 1 23 855 878 855 878 0.95 4 17 3.3 2e+02 2.5 0.3 3 11 886 894 885 897 0.89 5 17 8.7e-05 0.0052 16.9 0.9 1 23 1095 1117 1095 1117 0.98 6 17 3.4e-06 0.0002 21.3 0.7 1 23 1123 1146 1123 1146 0.97 7 17 0.51 30 5.1 0.3 2 12 1153 1163 1152 1168 0.85 8 17 0.008 0.48 10.7 2.4 3 23 1409 1429 1407 1429 0.97 9 17 0.0058 0.34 11.2 1.3 1 19 1435 1453 1435 1453 0.94 10 17 1.1 63 4.1 4.8 3 23 1695 1715 1693 1715 0.96 11 17 0.0002 0.012 15.8 0.9 1 23 1721 1743 1721 1743 0.95 12 17 1.8e-06 0.00011 22.2 1.3 1 23 1749 1772 1749 1772 0.97 13 17 1.3 78 3.8 0.2 2 11 1779 1788 1778 1792 0.86 14 17 0.036 2.1 8.7 0.6 1 22 2046 2067 2046 2070 0.86 15 17 1.9e-06 0.00011 22.1 0.4 1 23 2076 2098 2076 2098 0.98 16 17 1 62 4.1 0.9 1 23 2104 2126 2104 2126 0.97 17 17 2e-05 0.0012 18.9 1.5 1 23 2132 2155 2132 2155 0.97
Sequence Information
- Coding Sequence
- ATGAATGACCCTTCAATATCCCGCCCGAATGATCAGCTATTAGAAGATTATCGACAAGATGGAAATAGAAAAATTTGTTCGTTGCGCGTTAGAAATGTTATTTTCCGAAATGTTTCGAGACCATGGATAAGTTTTGTTTTGGGAGCCTGGGTTACATTACTGATTGTTTTGTACAAATGGCCAGGAACAAACACATCAGTATTAGAAAAGCAAAACGAAATGCTGAAATTGCAACTCAAAATGACCCACACTCACATAGAAGAACTAATAAAAAATAGCAATAGTAACAGTCAGCAGCAAATGTCATCACACGGTCTAAGTAATACTTTAATCAGTGAAGATATATTTCCCTGTGAAACTATTCACGTGGCTCTGGTATGCGGAGGATACAATTCTACACGTGGAATTGTCCCTCTTATTAAATCAATTTTATTTTATAGAAGAAATCCCATTCATTTTCATATTATGGTAGATGATAAAGCATTCAATATTCTAGAAACATTATTCAATACATGGGATCTTCCAGAAGTTTCAATAAGTTTTTATCATGCAAGTGATGCAATACCAGTTGTGTCTTGGATTCCAAATGCTCATTATTCTGGCATTTATGGACTTCTTAAATTAACACTGCCTGAAATACTTCCAATTAGTGTAACTCAAGTGATAGTATTAGATACGGATTTAACTTTTTTATCGGATATAGCCGAGTTATGGATTATGTTCAAAAAAATGTTAAATGGGGAGGTTTTAGGTCTTGTAGAAAATCAAAGCGATTGGTATTTAGGTAAACTCTGGCACGATTTTAAACCGTGGCCGGCAATAGGTAGAGGTTTCAATACTGGTGTCATATTGCTGCGCTTAGATCACATAAGAATGAAGTCAAATTGGCGGCAGATGTGGAAAAATGTTACAGAAGATAATTTATTGAAGTTTTCCGGTACAAAGTTAGCCGATCAAGATATTTTTAATGCTGTTATCAAACAATATCCGGACTTTGTTTATAAGCTAGACTGTGAATGGAATATTCAATTGAGCGACAACAGTAGAAGCGAGAGCTGCTATTCTAAAGCTTATAGTATTATCAAAATAATTCATTGGAATTCACCAAGAAAATATAAAGTGAAATTAAAAAATATTAAATATTTTCAAAGTATACATCAAATGTTTCTTGGATATGATGGAAATTTACTTCGAACTAAACTAATGAATTGTAGAGAAAATTCTCCTATTAGTAAGATAAATAACACAGATGTTTGTAATACTTTTCATCACGCTCAAGACTCAAAGCTAAGAACGCATTTATATTTCATGGAATTTGCTTATAGCCATCGTGATAGTTATGATGTAACACTAGTAGCACAATTATCCATGGATAGACTACAATTTTTAGAAGAACTTAGTTCCCATTGGGAAGGACCTATGAGTTTGGCATTTTACATATCAGATGCTGAATCGCAGGAATTGCTTACATTTGTTGAGGACTGGTCAGAAATATTAAAGATCAGAAAAAACATTGCTTATCATTTAGTATATAAACAAGGGACACATTATCCTGTAAATCATTTAAGAAATGTGGCTTTGAGAAATGTAGTTACACCGTATGTTTTTCTTATGGATATTGATTTTCTACCAATGTTTGGTATTTACAGCTATCTCAGAAAATCAATTCAACTGATTAATCCAGGTCCATCAAAGAAGGCATTAGTAGTAGCGGCTTTTGAAACTCAAAGGTATCGTAACAAATTCCCGAAAAATAAGGCAAATGTTTTAAAACAATTAGAAAATGGAAATTTATACACATTTCGATATCACGTTTGGAAAAGAGGACATGCTCCAACAAATTATGAAAGATGGAGAAATACTAGCTCACCTTATCAAGTACTGGAAAACGATGGACTACCAGATTGTATCTGTTTTCAGTGTTTCATTAAGCTAGAAAAATTATCCTGTTTCATAAAAGTTTGCAAAGAAAGTGATAAAATTTTGAGAAAAGATATTCAATCAAATACCACTAACACTACAATTCTTGAAATGGTTCCTAAAATAGAACAAATAAATTTTAATGTACTTAAAAGTTGTCCAGCAGAATCACCCATTGCTCTGGTTGAAACAAATTTTTCATCGAGTGCCAATTCAAGTCCATTGAAAATTAAAGAAGATACAAATTGCACACTTTCAGATGATATTGATATAGAAATGAATACACCTAATTTCATAAAAGAAGAAAATGTCGATTCTGAAGAGGAAGTACCAAATGATGAAATCGAGAGACTTTATCCTAAAATTGAAGAAGATAATAAGATAATGATAAAAATTGAAACAAATAACGAAGTGAATATAGAAAAAAATAAAATAAAAAGAACTAGGAAAAGGAAACCTCCTCCCCAGTGCAGTACACTCTGTCCCATTTGTGCAAAAGAATTCAAAACCTTTCAATCGCTCAAAATACACATAAAAAGGCATAACGAAGAGAAAAAATTTTCTTGTGAAAAATGTGGCAAAGAATTTGCGACCAATCATAGACTTAAAACGCATGAATTCACACATACAAACACAAAAAATTTTCCCTGCAAGGCATGCGGTAAGAAATTTTTAACCCCGTACTACACTGCAAAACATTTCAAAAAAATCCACATGAAACATGAGCAGGCGCATTGTCATATTTGCGACAAAAATTACAGCATGGATTATTTTAAGGTTCAAAAGAATGACAGGCTACCAGAGTGTATTTGTTTTGAATGTTTTAATTTGCTGGAGAAATTGTCCCGTTTCATTAAAAATTGTAAAGAAAGTGAAGAGATTCTTAAAAACAACTTAAAAAATAATAATGATTGTTGTGATATACTTGAAAACAGTGCCATAAAAATAGAAATTGATAGCGAAACGGATTTAAAAGTCGAAGAAAATTGTGATTTTTCTAATGTTAAAATTACAGTCAATACAGCTTTTCTGAATGAATCGCCGGTTTTAGAAATAAAGAAGGAAATATGTGAGGATTATATTTCGCCTGATTCTGAAGAAGATAAATCTGTTTCTAAAATTGCTAGTGCAGAAAACTTTAGAGAATTTTGTTTCGCAAACGAAGACATAAAAAATATATGCCTAAAAACAAACCTCAAAAATGACATTGATAATAAGAAGATATGTATCAAGCTGGAAACTAATAAAATTTCTACCCAAAGGAAACAAAATGAGAAAATTACAATTTGTCACATTTGCGCAAAAGAATGTAAATCCAATAGGTTCAAAAAACACGTAGAAAGTCACTACCCAATGAAAATGTTCTCGTGTTCCATATGCGCCAAGGAATTTAATCAATCCTATAAACTTAGAGCGCATGAACAGACTCACTCAAAGGTCAAAGATTATTCGTGTTTGGAATGCGGAAAAAAATTTAGAACCCCCGGCTACGTAACTAAGCATATGAACAAAGTGCATTTAAGCCGTGAAAAGGGCAAATGCACAATATGTGATAGAAGCTACACTACAGATTATTTAAAACAATGTGTCGAATATTTTCAAGAATGGCAATGTGTGGTTAATGTCAGTGTCAGTGGAGCGATGTCGCTGTGCCGGTTATGTTTAACGACTGGTGCGGGCAGCCGCATCTTCGATAATAATGGAGGTGATGTGGCTGCCCGCATCAAAACCTGCTGTCGCCTCAAGGTACAAAAAGATGATGGACTCCCTGACTGTATCTGTTTTGAATGTTTCATTTTATTGGAAAAACTATCCCATTTCATAAAAGTTTCCAAAGAGAGCGATAAGATTTTAAGAAAAAATAAGAAACTAAATCCCATTGTTGAAATGAATATTGAAAAAAGTGATAATGAAGAAAATACTAATGGTTATAATTGCGATGTAAAATCTATTGAGCAAGTAATTGAATCTCCTATTGAATGGAAAAGAGAAAAAAATGCATCACCGCTGCCTATCAATCCGTTAACAGATATAAAAAAAGAACCAGAATCAGAAGTTATTCCAGAGGATTTAATAAAAAAAGAGATATCTGATTCAGAAGATGACCCATCTGAAGAGGAATGTGAAGAACCATTTCGAGAAAATGTCAGTCAAAATTTTATACCAATGAAAGGGCAAATAATTCTAAATAGTAATTGCATCACAACAACTAACAATATAGGAAGAAAATCCGAGAAGCAAATTATATTTGAAAACATTGGAAAAATGAAGGAAAAGAAAGTTTCTGCCCACTGCAGTACTATTTGTCATATTTGTGCCAAAGAATTTAAAGGACCTTGTCGCCTTAACATCCACATTAAGACACATGGTGCTTTAAAAACGTATTCTTGTTCAATTTGCGATAAGAATTTTTCTACTAGTACTCAACGTAAGGATCATGACAATGTGTCGAGTATTTTCGATAATGGCAATGTGTGGTTCATGACTGTCAGTGGAGCGATGTCGGTGTGTCGGTTGTGTTTGACAAGCGGTGTGAGCAGCCGCATCTTCGACGATAGCGGCGGTGATGTGGCTGCCCGCATCAAAATCTGCTGTCGTCTGAAGGTAGAAAAAGATGATGGACTCCCCGACTGTATCTGTTTTGAATGTTTCATTTTATTGGAAAAACTATCCCATTTCATAAAAGTTTCCAGAGAGAGCGATAGGATTTTAAGGAAAAATAAGAAACTAAATCCCATTGTTGAAATGGATATTGAAAAGAACGATAATGAAGAAAATACTAACGATTATATATCTGATAATAAATCTATTGAGCATGTAGTCGAAGTTCCTATTGAATGGGAAAGAGAAGAAAATGCATCACCGCTGCCTATCAATCCGTTAACAGATATAAAAAAAGAACCAGAATCAGAAGTTATTCCAGAGGATTTAATAAAAAAAGAGATATCTGATTCAGAAGATGACCCATCTGAAGAGGAATGTGAAGAACCATTTCAAGAAAATGTCAGTCAAAATTTTATACCAATGAAAGGCCAAATAATTCAAAATGGTAACTGCAACACAATAACTAAGAATAAAAGAATAAAATCCAAAAATCAAATTGCATTTAAAAACATTGGAAAAATGAAAGAAAAGAAAGTTTCTGCCCACCGCAGTATTATTTGCCATATTTGTGCCAAAGAATTTAAAGAACCTCATCGTCTCAACTGCCACATTAAGAGACATGGTGCTTTAAAAAAATATCCTTGTTCAATATGCGATAAGAATTTTTCTACTAGTTCTCAACGCAAGGATCATGAGTTTATCCATTCATTATCGAAAAAATTTTCATGTAAGGAATGTGGGAAGAAATTTTCAAATGCTCGTTATGTCAATAAGCATATGAGATTAATACATTTAAAGATCGAGCGAGTGAAATGTCATTTATGTGACAAAAGTTACTATGGACGCTATCTTAAGCAATGTGTCGAGTATTTTCAAGAATGGCAATGTGTGGTTAATGTCAGTGTCAGTGGAGCGATGTCGCTGTGCCGGTTATGTTTAACGAGCGGTGCGGGCAGCCGCATCTTCGACAATAGCGGAGGTGATGTGGCTGCCCGCATCAAAACCTGCTGTCGCCTCAAGGTACAAAAAGATGATGGACTCCCTGACTGTATCTGTTTTGAATGTTTCATTTTATTGGAAAAACTATCCCATTTCATAAAAGTTTCCAAAGAGAGCGATAAGATTTTAAGAAAAAATAAGAAACTAAATCCCATTGTTGAAATGAATATTGAAAAAAGTGATAATGAAGAAAATACTAATGGTTATAATTGCGATGTTAAACCTATTGAGCAAGTAATTGAATCTCCTATTGAATGGAAAAGAGAAGAAAATGCATCACCGCCGCCTATCAATCCATTAACAGATATAAAAAAAGAACCAGAATCTGAAGTTATTCCAGAGACTTTAATAAAAAAAGAAGTATCCGAATCAGAAGATGACCCATTTGAAGAAAAATGTGAAGAACCGTTTCGAGAAAATGTCAGTCAAAATTTAATACCAATGAAAGACGAAGTAATTCAAAAAAGTAGCTGCATGGCATTCAAGATGAAAGATCAGAAACCTATTGGCAGTAGCCTTTGTCCTATATGTGCCAAAGAATTCAAAAGACCATGTTTTGGCACCAAATATCATATGAAAGTCCATGAAAATACGCATTCAAAAATAAAAAACTTTCCATGCAATATTTGTGGTAAAATGTTCCTTACACTCGAATATGTCGTAAAGCATAGACACATGATGATACACAATGCACAGCCAGATTACATTTGTGATATTTGCAATAGGCCATTTTCTACAAAATCAGCTATTACTTCTCACATGAGATCACACACGGGAGAAAAGCCATATACATGTAAATTTTGTGCAGGTAAGTTTTCTTATTTGAAAACAGTCATTGAACACGAGAGATTACATACTGGTGAAACACCCTATAAATGTCCTGTGTGCAATAAAGGATATGCGCAAAAGTCCAACATGAAAAGTCATTTCAGAAATAACCATAAAGACGTTGATCCCCAGCTTATTGTTATAGGTAGAATACGGAAAAATATATATTTTGCCAGTTTAGACCCAGGAAAGCTCAAGGAACAAAACAAACAAAAGAAGACCAACAAGCCGATTCCCTGA
- Protein Sequence
- MNDPSISRPNDQLLEDYRQDGNRKICSLRVRNVIFRNVSRPWISFVLGAWVTLLIVLYKWPGTNTSVLEKQNEMLKLQLKMTHTHIEELIKNSNSNSQQQMSSHGLSNTLISEDIFPCETIHVALVCGGYNSTRGIVPLIKSILFYRRNPIHFHIMVDDKAFNILETLFNTWDLPEVSISFYHASDAIPVVSWIPNAHYSGIYGLLKLTLPEILPISVTQVIVLDTDLTFLSDIAELWIMFKKMLNGEVLGLVENQSDWYLGKLWHDFKPWPAIGRGFNTGVILLRLDHIRMKSNWRQMWKNVTEDNLLKFSGTKLADQDIFNAVIKQYPDFVYKLDCEWNIQLSDNSRSESCYSKAYSIIKIIHWNSPRKYKVKLKNIKYFQSIHQMFLGYDGNLLRTKLMNCRENSPISKINNTDVCNTFHHAQDSKLRTHLYFMEFAYSHRDSYDVTLVAQLSMDRLQFLEELSSHWEGPMSLAFYISDAESQELLTFVEDWSEILKIRKNIAYHLVYKQGTHYPVNHLRNVALRNVVTPYVFLMDIDFLPMFGIYSYLRKSIQLINPGPSKKALVVAAFETQRYRNKFPKNKANVLKQLENGNLYTFRYHVWKRGHAPTNYERWRNTSSPYQVLENDGLPDCICFQCFIKLEKLSCFIKVCKESDKILRKDIQSNTTNTTILEMVPKIEQINFNVLKSCPAESPIALVETNFSSSANSSPLKIKEDTNCTLSDDIDIEMNTPNFIKEENVDSEEEVPNDEIERLYPKIEEDNKIMIKIETNNEVNIEKNKIKRTRKRKPPPQCSTLCPICAKEFKTFQSLKIHIKRHNEEKKFSCEKCGKEFATNHRLKTHEFTHTNTKNFPCKACGKKFLTPYYTAKHFKKIHMKHEQAHCHICDKNYSMDYFKVQKNDRLPECICFECFNLLEKLSRFIKNCKESEEILKNNLKNNNDCCDILENSAIKIEIDSETDLKVEENCDFSNVKITVNTAFLNESPVLEIKKEICEDYISPDSEEDKSVSKIASAENFREFCFANEDIKNICLKTNLKNDIDNKKICIKLETNKISTQRKQNEKITICHICAKECKSNRFKKHVESHYPMKMFSCSICAKEFNQSYKLRAHEQTHSKVKDYSCLECGKKFRTPGYVTKHMNKVHLSREKGKCTICDRSYTTDYLKQCVEYFQEWQCVVNVSVSGAMSLCRLCLTTGAGSRIFDNNGGDVAARIKTCCRLKVQKDDGLPDCICFECFILLEKLSHFIKVSKESDKILRKNKKLNPIVEMNIEKSDNEENTNGYNCDVKSIEQVIESPIEWKREKNASPLPINPLTDIKKEPESEVIPEDLIKKEISDSEDDPSEEECEEPFRENVSQNFIPMKGQIILNSNCITTTNNIGRKSEKQIIFENIGKMKEKKVSAHCSTICHICAKEFKGPCRLNIHIKTHGALKTYSCSICDKNFSTSTQRKDHDNVSSIFDNGNVWFMTVSGAMSVCRLCLTSGVSSRIFDDSGGDVAARIKICCRLKVEKDDGLPDCICFECFILLEKLSHFIKVSRESDRILRKNKKLNPIVEMDIEKNDNEENTNDYISDNKSIEHVVEVPIEWEREENASPLPINPLTDIKKEPESEVIPEDLIKKEISDSEDDPSEEECEEPFQENVSQNFIPMKGQIIQNGNCNTITKNKRIKSKNQIAFKNIGKMKEKKVSAHRSIICHICAKEFKEPHRLNCHIKRHGALKKYPCSICDKNFSTSSQRKDHEFIHSLSKKFSCKECGKKFSNARYVNKHMRLIHLKIERVKCHLCDKSYYGRYLKQCVEYFQEWQCVVNVSVSGAMSLCRLCLTSGAGSRIFDNSGGDVAARIKTCCRLKVQKDDGLPDCICFECFILLEKLSHFIKVSKESDKILRKNKKLNPIVEMNIEKSDNEENTNGYNCDVKPIEQVIESPIEWKREENASPPPINPLTDIKKEPESEVIPETLIKKEVSESEDDPFEEKCEEPFRENVSQNLIPMKDEVIQKSSCMAFKMKDQKPIGSSLCPICAKEFKRPCFGTKYHMKVHENTHSKIKNFPCNICGKMFLTLEYVVKHRHMMIHNAQPDYICDICNRPFSTKSAITSHMRSHTGEKPYTCKFCAGKFSYLKTVIEHERLHTGETPYKCPVCNKGYAQKSNMKSHFRNNHKDVDPQLIVIGRIRKNIYFASLDPGKLKEQNKQKKTNKPIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -