Basic Information

Insect: Stenopsyche tienmushanensis
Gene Symbol: snmp2
Assembly: GCA_008973525.1
Location: Contig114:913089-947850[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00065 0.038 14.2 4.7 2 23 204 225 203 225 0.96

2 11 2.4 1.4e+02 3.0 0.0 8 21 309 322 308 323 0.90

3 11 0.0088 0.52 10.6 0.8 1 23 332 355 332 355 0.96

4 11 0.0082 0.49 10.7 0.2 1 23 401 424 401 424 0.90

5 11 0.00019 0.011 15.9 1.4 1 23 498 521 498 521 0.98

6 11 1e-06 6.2e-05 23.0 4.4 1 23 542 564 542 564 0.98

7 11 0.00015 0.0088 16.2 0.8 1 23 571 593 571 593 0.94

8 11 4.8e-06 0.00029 20.9 5.1 1 23 603 625 603 625 0.98

9 11 1.2e-07 7e-06 25.9 0.8 1 23 631 653 631 653 0.99

10 11 6.2e-07 3.7e-05 23.7 1.7 1 23 659 681 659 681 0.99

11 11 0.022 1.3 9.4 0.4 1 22 687 708 687 711 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00065	0.038	14.2	4.7	2	23	204	225	203	225	0.96
2	11	2.4	1.4e+02	3.0	0.0	8	21	309	322	308	323	0.90
3	11	0.0088	0.52	10.6	0.8	1	23	332	355	332	355	0.96
4	11	0.0082	0.49	10.7	0.2	1	23	401	424	401	424	0.90
5	11	0.00019	0.011	15.9	1.4	1	23	498	521	498	521	0.98
6	11	1e-06	6.2e-05	23.0	4.4	1	23	542	564	542	564	0.98
7	11	0.00015	0.0088	16.2	0.8	1	23	571	593	571	593	0.94
8	11	4.8e-06	0.00029	20.9	5.1	1	23	603	625	603	625	0.98
9	11	1.2e-07	7e-06	25.9	0.8	1	23	631	653	631	653	0.99
10	11	6.2e-07	3.7e-05	23.7	1.7	1	23	659	681	659	681	0.99
11	11	0.022	1.3	9.4	0.4	1	22	687	708	687	711	0.91

Sequence Information

Coding Sequence: ATGGCAGAAACGGACGGCAACAATGGTTTGGAGATCAATTTGGACCGAGTGTGTAGGACGTGTCTCCGAGAAGGAGAACAGATGCGCTCCATGTTTTTGAGTGAAAATAATTTGAATGATGTCTGCATTACTAAGATGGTCACATCCTGTACACAATTGAAGGTCTTAGAAGATGATGGTCTTCCTATACATATTTGCTACAATTGCTTGAATACTTTGACAAATGCGTTTTCTTTTAAATTACAAGCTGAAAAAGTGGACGCTAAATTGAGAGATTATATCGCACAAAGGAAATGTCGCCCTCTTTTAATTGTAGAAGATTCTATCAAGGAGGAGGAGGAAAAAGATTTTACCCATGGCGATAACAATATCGTTGTTAAGACTGAGGATCAAAATGAAAATTTTGAATATCAAATGAAGAATAGTTATAACGAATCACCCAATAATACAGCAGATGACCAATCGGATGATTCAGATGATTTTAAACCATTGAAAGATTTAAAAGTCATTGCGAATAAGAAATTAAAGGATACTGATGATGAAGATTTTTCAAAGAAATTAGATAATCATAAACAACAAAGATACCGGACAGATATTCGTAGGACGTTAACATGCAAATTATGTGATAAGACATTCAAATATGTTAACTGCCTCAAAAAACATCTTCAGAATCATATTTCCTTTGAGCCTTTTGCTACTGTGGACTTAAAATCAAAAACAGCTTTATTAGGAAATCATGAAAAGCTTTCTGGTACAGATCCACAAACTCTTTCTGATGATTATATTATAAAGCTCATTATAGAAGATATTAAAGCAGGAAAATTTGATCAGTACATGGGCGAAGCAAAAACTGATGACAATAGAACTCCGCCTATGCTTATCGTTCCCGAGATCCACGTGCCTGTTAAAGATCCAGCTGATAAAAAGGTGTTTCCCAATAAAGAAATGCTATCCAGGCATAATAGAATACAATGTGAAAATACAATAAAGCCATACCGTTGCGGTACCTGCGATATGAAATTTCCTGATGAAATATCCTTCAATGATCATACGACAAAACGTCACAAAGGCGATTCCGTGTCAGCAAATTTTGTTAGATTAGAAGATATAATTGCAGAAAAATTTGAACAGTATATAAGCGAATTGAAAGTTGATAACACCCAGACTTTCAATCCTGCGTATGATGGACCAACAAAAATGTATGCGTGTGACATTTGTGACATGAAATTCACGGAAGTGACAAATTTTCAAGAGCATGCATCAGAACAACATTCCGATCAGACAGTTACTTTTACGATAATTGATCTAGAAAACATCAAAACTGAAAAAACAGATTCGTATACAAGTGAAGTAGATAACAATGGAATTAATTCAGATGCCATGGACGGAGACTCCAACGGATTTGATGAGTCAATATCGCAAGAGGTATTTCCAAATAAAGAAATGCTCGACAAACATAGTCTAATGAGATGCGAGAACACTTCCAAAACTTACAGATGTAGTACTTGTGATATTAAGTTTTCCAGTGATAAGGAGTTTACCGAACATATTATGACGAGGCATAAAGGTGAATCTGTCTCTGTAAATTTTATTGATCCTTTATGCCAGAAAAAAGAAAAGACTTTTCCATGTGAACATTGTGATAAATCTTTTTATAGGAAAGATCATTTGGATAAGCATATTAAAATACATGCACACAGAGAGAGAATATTTGAATGTGAAATTTGTCAAAGAAAATTTAAAGAAAAAGAGAATTTAATATCTCATTCCTTCGTGCACGAACTTAAGAAAGGCTTAGATTCCAAATATCATTGTATGTATTGTGATCATTCATTTTCAAATACCTCCAATCTTATAGTACATATGCGTAGACACACCGGTGAAAAACCATTTAAATGTGATATATGCGAAAAAGGATTTTCCCGGTCAAATAAATTGGCTAGACATATGAGGGTTCACACCGGTGTACGACCATACAAATGTACATTTTGTGATAGAGCATTTACACAATCGAATGACCTCACACTCCATATCAGACGGCACACTGGAGATAGACCATACGTTTGCGACATATGTGGTGATAGATTCATAAATGGTACGGCTCTGCACACCCATCGACGCCAACAGGGTCACTACATACGTGTGATTGAACAGACACCTCCATATGCTGTCAATCCATTAAATAACTTGGAAGAAAGTAGTGATGCAAATTTAGCGGCTCAGGTGGAAGTATCGATAAAAGCAGAGTTAGTTGTTCAAAATACTACGACAATGGGATATCCGTGTCTCATAACGTTTTTCTGCATAGGACTCGGTCTGATTATATTAGCACTTACTTTGGGACTAGGAGTTGTTCCAGCTGTAGTTAAAAATGAAATTATTAAGAATATAAGATTAGAATATGGGACTGATCAATTCGATTTGTTTCAAGAAATACCATTCTACACAGATTTTAAAGTATTTTTCTTCAACGTGGAGAACGAGGAAGCGGTTGAACAAGGAGAAAAGCCAATACTCAGAGAAATTGGACCCTATGTATACAAACAATTCAGAAAGAAGCATAGTATTGTTCTCGATAATGGAACGATTGCCTATTATCAAGATATGTGGTTCGAATACAATGTAGAAAAATCAGGGAATTTAACTGAAGACGATTTTATTAGTATTGTTAACATTCCAATGAATGCCATGATCCAACTAGTTGAGTTGTTTCGTCCTTCTTTACTTAACATTTTTCTGAATCAAATGGAATTAATTTTTGGCGAAGGTCATAGAATTATATTGCGCACAACAGTGAGAAAAATTCTATTCGAAGGTGTTGAAATATGTAGACAAGGACTTGTGTCACTTTGTACTATAATAACTGCTTTTCCTTCTGTTACTTTGAGACCTGATGGCATGAGAACAACCTACTTTTCGTTATTTAATCATAAAAATATGACACACGAAGGAAGATTTAAAATAGATGCTGGATTGGATAACATTGAAGACATTGGACAAATCTACGAGTGGGAAAATCAAACTGAACTGACTTTTTGGAATGATGGCATCACAAACTCATGCAATATGATTAACGGTACAGACGGTACGCTGTATGCACCATTTTTGGAAAAAACTCGTGTGATGGATATATTTGTTCCCGATATATGCAGGTTGCCCCTCTCAGTTCGGCGATTACAAAACGATATAGAAGTCAACGGAAGACAATGTTGTTTTTCGTTGCAAAGTAAAGATCATCAAATGCATCTCCTCGAGGCCGTCTTCTTGGTGTTCTTCTTGTTCCTGCTCCGTTCCTAG
Protein Sequence: MAETDGNNGLEINLDRVCRTCLREGEQMRSMFLSENNLNDVCITKMVTSCTQLKVLEDDGLPIHICYNCLNTLTNAFSFKLQAEKVDAKLRDYIAQRKCRPLLIVEDSIKEEEEKDFTHGDNNIVVKTEDQNENFEYQMKNSYNESPNNTADDQSDDSDDFKPLKDLKVIANKKLKDTDDEDFSKKLDNHKQQRYRTDIRRTLTCKLCDKTFKYVNCLKKHLQNHISFEPFATVDLKSKTALLGNHEKLSGTDPQTLSDDYIIKLIIEDIKAGKFDQYMGEAKTDDNRTPPMLIVPEIHVPVKDPADKKVFPNKEMLSRHNRIQCENTIKPYRCGTCDMKFPDEISFNDHTTKRHKGDSVSANFVRLEDIIAEKFEQYISELKVDNTQTFNPAYDGPTKMYACDICDMKFTEVTNFQEHASEQHSDQTVTFTIIDLENIKTEKTDSYTSEVDNNGINSDAMDGDSNGFDESISQEVFPNKEMLDKHSLMRCENTSKTYRCSTCDIKFSSDKEFTEHIMTRHKGESVSVNFIDPLCQKKEKTFPCEHCDKSFYRKDHLDKHIKIHAHRERIFECEICQRKFKEKENLISHSFVHELKKGLDSKYHCMYCDHSFSNTSNLIVHMRRHTGEKPFKCDICEKGFSRSNKLARHMRVHTGVRPYKCTFCDRAFTQSNDLTLHIRRHTGDRPYVCDICGDRFINGTALHTHRRQQGHYIRVIEQTPPYAVNPLNNLEESSDANLAAQVEVSIKAELVVQNTTTMGYPCLITFFCIGLGLIILALTLGLGVVPAVVKNEIIKNIRLEYGTDQFDLFQEIPFYTDFKVFFFNVENEEAVEQGEKPILREIGPYVYKQFRKKHSIVLDNGTIAYYQDMWFEYNVEKSGNLTEDDFISIVNIPMNAMIQLVELFRPSLLNIFLNQMELIFGEGHRIILRTTVRKILFEGVEICRQGLVSLCTIITAFPSVTLRPDGMRTTYFSLFNHKNMTHEGRFKIDAGLDNIEDIGQIYEWENQTELTFWNDGITNSCNMINGTDGTLYAPFLEKTRVMDIFVPDICRLPLSVRRLQNDIEVNGRQCCFSLQSKDHQMHLLEAVFLVFFLFLLRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -