Stie003134.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- Cat-1
- Assembly
- GCA_008973525.1
- Location
- Contig045:350263-362182[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.9e-06 0.00053 20.0 0.4 3 23 466 486 465 486 0.99 2 11 0.001 0.06 13.6 0.9 1 23 492 514 492 514 0.95 3 11 0.00012 0.007 16.5 0.9 1 23 520 543 520 543 0.97 4 11 0.00075 0.045 14.0 5.1 2 23 550 571 549 571 0.98 5 11 0.0013 0.077 13.2 5.7 1 23 577 599 577 599 0.98 6 11 3.4e-05 0.002 18.2 2.5 3 23 913 933 911 933 0.97 7 11 1.3e-05 0.00079 19.5 0.2 1 23 965 988 965 988 0.98 8 11 0.0037 0.22 11.8 0.4 2 23 995 1016 994 1016 0.96 9 11 0.00019 0.011 15.8 5.6 1 23 1022 1044 1022 1044 0.99 10 11 0.00016 0.0096 16.1 6.2 1 23 1050 1072 1050 1072 0.98 11 11 1.6e-05 0.00093 19.3 1.8 1 23 1078 1101 1078 1101 0.96
Sequence Information
- Coding Sequence
- ATGTACACACATTTATTATTTCTGGCAGCGACGCTTGTTTTTAATATAGTTTCAATAGAATTTAATCACACATTACAAGAAGTGACGTCTTTTGCTTTGAATTTAGAGAATACGGATGTACATTGGAAAAACTATAAGAGTTTATATAATAAAAGCTATGCGAGTTCAGCTCATGAACAGACAGCAAAAAAAGCTTGGAAAGAAAATCTTAAAACAATCCATTCTCATAACGCTCTCGGACATTCATATAATTTGCGTGCAAATCACTTGAGTGATATGACTCTTCGGCAGTATTTACGAAGTGTTGTAAAATTGGTTGGAGATGATCATTCGCATAATCATACTATACCAGAACATTTACTTAGACATGATACAAAAATACCTGATCAGGTGGATTGGAGAGATGCGGGTTTTAGACCATCGATTTCTAGCCAGAAAAGATGCGGAGCCTGTTACGCTTTTAGCGTCGCGCACGCTTTACAAGCTCAAATTTTCATAGCCAAAAAGAAATGGTTGCCTCTAAGTGAGCAGCAAATAGTAGATTGTAGCGGTCACTGGGGCAATTACGGCTGCGGAGGAGGCTCTCTGAGAGGCGCTCTACGCTATATAGAAATTCATGGAGCTATGTCGTATAGAGACTATCCGTACACTGCTAAGAAAAGCAAATGTAAATGGAATGCTCGCCGCGTTAAAGCTGTTTTAGCGTCTTGGGGACTCATTCCAAAAGGAGACGAACTTATGTTGCAACGTGCAGTTGCACTTTTAGGTCCTATAGCCGTTTCCTTGAATGCGGCTCCTCAAACGTTTCAACTTTACCACTCAGGGATTTATGATGATATCAAGTGTTCCAGTAAGAGTGTCAATCATGCTGTATTGATAGTGGGCTATAGTAAATCATATTGGATATTGATGAACTGGTGGGGAACTCATTGGGGAGAGAGAGGATATATGAAAGAGAGCGATAGAATATTACGTGGAAATTTAAAACCTGATTTTCCTATCAGCGAACACATTGAAATATTGAAGAAGGATGAAAATGCAACTGAATATGTGGAGACACCAGTGAACGAATTTAAATTTTCTCAAAATGAGCGGATATTTTCAGACACAAATCCTTTATGCGAAACTCCCATTAAAATTGAACTGCAAAATGGAGATGTAAAACTTGAAAATGACAATTTTTATCCTATTCACATAAAACATGAGATGCTAGAGACGATCATCGAGACGGATACGTGTCCCGATAGTATCGTAAATATAAACAATAATGAAACAGTTCCAAAGATAGAGCAAGAAAATGAAAAGAAAGACTTAAGACTTATTAAAAAAAAGGCTAGAATTAGAAAGCCGCGCAATTCTATTAGCTTAAGGCCGACCGGCGCCAAGAGCTTACTTTGTCCCATTTGCGGGGAAGTTTTCAAAAGCCACGTCTATCTTGGCCGTCATATAAAAACACACAATCCAATAAAAAGATTCGCTTGTGAAATATGCGAAAAGAAATTCTCAAGCAACAGCAAACGGAAGGAACACGAAGGCACCCATATCACCACCAAGAATTTTACTTGCGAAAGATGCGACAAAAAATTTTCTTCCATTGGCACTATGAGGAAACACGTCAAGATCGTTCATCTGAAATTACGAAGAACGCAATGTAAATTATGTGAAAAATATTACAGCACATCTTGCAGCTTTCAGAAACATATGCTCACGCATACAGGTCAACGTGATTTTGAATGTGACGTATGCCACAAAAGATTTGCTTATAAATCTTCTATCCAATGTCATATGAGAACTCACTCCGGAGATAAGCCATATGCGTGCAAATTTTGTTCCAGTAGAGAGAGCGATAGAATATTACGTGGTGATTTAAAATCTGATCTTCCTATTGGCGAACACGTTAATACATTAAATAAGGATGAAAATACAACTGAATATGTGGAGACGCCAGTGAATGAATCCAAATTATCTCAAAATGAGCAAATCTTTTCAGACACGAATCCTCTATGTGAATCTCCCATTAAAATTGAACTGCAAAATGGCGATGTAAAGATCGAAAATGAAATTTTTGACCCTATCCACATAAAACAAGAGATACCAGAAACGATCGTTGAGACTGATACATGTCCCGATGTTACCATAAATATAAACAAAAATGAAACAGTTCCAAAGATAGAGCACGAAAACAAAAATAATGAAGTTATGCTAATTAAAAAAAAGGCTAGAATTAGAAAGCCGCGCAATTCTATTAGCGTGAAGCATCGCGTGGAGAGGAAAATGGCATTCAATGAAAACGTATGTAGACTTTGTTTACAAGAAAATGCGTTTCATTTAATATGGGAAGGAAATCCTGGACTCTCGCAAAGAATTGCATCCTTTTGTCAATTGGAAATCGCCATAGATGATGGTTTATCGTCTTTCATTTGCGATATTTGCAATTCAACCCTCTCTAAAATGGCATCTTTATATGAACGTTGTCATTTAGTAGATCAGATTTTGAGAGCAAAACATCAAGAAGCAACACCATCGAAAAGTGTCAAATTCGAATTTTCTTCATGTTCATCTCCCGTTGCCGGTTCTGAAAACAGTTTCGGAAGCTGCGATATTTACGATGAAGAATTGCCACTTTCTTGTATAATCAAAACTGAAAATGATAGCCACGTATCTATTAAAGCTACCGACTCAATTAAGAATTTGTGTGCAACAAATAAAAATCGAGAAAAGTCGACAAATTGTCTTTGTTCATTTTGCGGGAAAGTATACAACAGTTCAAAGTCTTTAAATATTCATATAAAAACCCACAGGGATTTAAGATCTGGCGATGATAAATCGCGTAAAAAGTGCAATTTGGTTTTTAAATTGGAGCGTTTTAAAAAACGCACCGCAAAGAGGCGGTACCCGTGTGAAGTATGCGGAAAAATGTTCAAATCAGTGGGTGACGTGAAACGTCATAAAAATACCGTACATACAAAATCTTGCAGCGTCGAATGCTTGGTCTGCCTTAAGAAATTGGCTAGCCAACAAAGCCTTAAGAGACATTTGAAAATTCATTCAAACGAAAGGGAGTTTGAATGCGATCATTGCAGGAGGAAGTTCAATTCTAAGCCGTGTCTAGTATTACATATGAGAACGCACACGGGAGAAAAACCGTATAAATGTAAACACTGCGACAAAAGTTTCTCCATCCATAAATCTTTGAGAGAGCACGAACGTCTTCACACCGGAGAGAGACCGTACGCTTGTCCCATTTGTTTTAAAGGCTTTTCGCAAAAATCAAATATGAAGAGTCATTTTAGATATAATCACAAAGAAAAACAACTGCAATAA
- Protein Sequence
- MYTHLLFLAATLVFNIVSIEFNHTLQEVTSFALNLENTDVHWKNYKSLYNKSYASSAHEQTAKKAWKENLKTIHSHNALGHSYNLRANHLSDMTLRQYLRSVVKLVGDDHSHNHTIPEHLLRHDTKIPDQVDWRDAGFRPSISSQKRCGACYAFSVAHALQAQIFIAKKKWLPLSEQQIVDCSGHWGNYGCGGGSLRGALRYIEIHGAMSYRDYPYTAKKSKCKWNARRVKAVLASWGLIPKGDELMLQRAVALLGPIAVSLNAAPQTFQLYHSGIYDDIKCSSKSVNHAVLIVGYSKSYWILMNWWGTHWGERGYMKESDRILRGNLKPDFPISEHIEILKKDENATEYVETPVNEFKFSQNERIFSDTNPLCETPIKIELQNGDVKLENDNFYPIHIKHEMLETIIETDTCPDSIVNINNNETVPKIEQENEKKDLRLIKKKARIRKPRNSISLRPTGAKSLLCPICGEVFKSHVYLGRHIKTHNPIKRFACEICEKKFSSNSKRKEHEGTHITTKNFTCERCDKKFSSIGTMRKHVKIVHLKLRRTQCKLCEKYYSTSCSFQKHMLTHTGQRDFECDVCHKRFAYKSSIQCHMRTHSGDKPYACKFCSSRESDRILRGDLKSDLPIGEHVNTLNKDENTTEYVETPVNESKLSQNEQIFSDTNPLCESPIKIELQNGDVKIENEIFDPIHIKQEIPETIVETDTCPDVTININKNETVPKIEHENKNNEVMLIKKKARIRKPRNSISVKHRVERKMAFNENVCRLCLQENAFHLIWEGNPGLSQRIASFCQLEIAIDDGLSSFICDICNSTLSKMASLYERCHLVDQILRAKHQEATPSKSVKFEFSSCSSPVAGSENSFGSCDIYDEELPLSCIIKTENDSHVSIKATDSIKNLCATNKNREKSTNCLCSFCGKVYNSSKSLNIHIKTHRDLRSGDDKSRKKCNLVFKLERFKKRTAKRRYPCEVCGKMFKSVGDVKRHKNTVHTKSCSVECLVCLKKLASQQSLKRHLKIHSNEREFECDHCRRKFNSKPCLVLHMRTHTGEKPYKCKHCDKSFSIHKSLREHERLHTGERPYACPICFKGFSQKSNMKSHFRYNHKEKQLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -