Basic Information

Insect: Stenopsyche tienmushanensis
Gene Symbol: -
Assembly: GCA_008973525.1
Location: Contig515:1888766-1898744[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.5e-05 0.0015 18.6 1.9 1 23 164 186 164 186 0.96

2 11 9.1e-06 0.00054 20.0 1.3 2 23 277 298 276 298 0.95

3 11 2.9e-05 0.0017 18.4 6.1 1 23 341 363 341 363 0.99

4 11 0.19 12 6.4 0.2 1 13 369 381 369 390 0.73

5 11 2.3e-06 0.00013 21.9 1.9 1 23 396 418 396 418 0.99

6 11 0.0024 0.14 12.4 4.6 1 21 424 444 424 446 0.94

7 11 7e-07 4.2e-05 23.5 1.0 1 23 467 489 467 489 0.98

8 11 0.42 25 5.3 2.9 2 23 495 516 494 516 0.96

9 11 6.2e-06 0.00037 20.5 0.9 1 23 522 544 522 544 0.98

10 11 2.6e-05 0.0016 18.6 0.5 1 23 550 572 550 572 0.98

11 11 9e-06 0.00053 20.0 1.6 1 23 578 600 578 600 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.5e-05	0.0015	18.6	1.9	1	23	164	186	164	186	0.96
2	11	9.1e-06	0.00054	20.0	1.3	2	23	277	298	276	298	0.95
3	11	2.9e-05	0.0017	18.4	6.1	1	23	341	363	341	363	0.99
4	11	0.19	12	6.4	0.2	1	13	369	381	369	390	0.73
5	11	2.3e-06	0.00013	21.9	1.9	1	23	396	418	396	418	0.99
6	11	0.0024	0.14	12.4	4.6	1	21	424	444	424	446	0.94
7	11	7e-07	4.2e-05	23.5	1.0	1	23	467	489	467	489	0.98
8	11	0.42	25	5.3	2.9	2	23	495	516	494	516	0.96
9	11	6.2e-06	0.00037	20.5	0.9	1	23	522	544	522	544	0.98
10	11	2.6e-05	0.0016	18.6	0.5	1	23	550	572	550	572	0.98
11	11	9e-06	0.00053	20.0	1.6	1	23	578	600	578	600	0.99

Sequence Information

Coding Sequence: ATGGACAATACAACAGTTGACGCATCAAATGATGACAAAACGGAATTGAAATGGCTGACGTCAGACACCGTCGAGAAAATATGTCGCGCTTGTCTTCGTACTGGAGATCTGCTACTTAATTTACACAATGAAAACTTTGCTACCAGCTTCACTGACTGCACTCAGCTTCAAATTGAAGAGAATGACGGCCTACCACCCTGTCTGTGTCAGTCATGCTTCAATATTTTGGGTCATTTTTATAACTTCAAGCTATTATGTTATAAATCTGATGCTGCATTACGACAACATTTTTTTGAAAAGGATCCGATAAAAACAGAGATAATAGAAGTTGAAGAAACAGAGAATAAGAATTTTGAATTACAAATCGAGCTTCCAGTGAACGATAACGATAATGAAAGTTTTTCAAGTAGTCCCTCAAAAGATCGTGCCCCTCATTTTCTTTTTGAACCATCGGTACCTAAGCCTAGTGATTCACTCGAAAACGAGATCTTCAAATGCAAAATTTGTCCAAAATTTTACAAAACTTTCACGGGATTGAATAAACATATGGTTCTGCATAACCAAATGAAGGCATTTTTAGAAAAGCGGAGAAGTCAAAATCTAATAGCTTCCAATAGAGAGCCAACTGAAGTTCAAGAACGGATAAAAATAGAAATACCTGAATTTGATATTCAAGAACATAACGATGACAATTTACAAGATGATCTGCTTTCTGATAATGATGACAAAAGTTTTTCAAATAAAGCATCTAATGACTTTCATCACGATGACCTTGAGCTATTGAAACAACAGTCTAGTGTTTTATCGTCAAAAAAGAAATTGTTGAGCAAGTGTACTATTTGCCCAAAAACCTTCAAATCTTCAAGAGGATTAAAAAACCACTTGATTTTTCATACTGAAGCTAATCCAATTTCAGATAATCAAACTCCCACAGTTTTTAAGAATGAAGATACTGATGTTCAGACTGTGCAGGCTGCAGACTTGCAGACGGAGGTGGTGCAAAATAATATAATCAAAGATTATTCATGTGAAATTTGCTCCATGTGTTTCTGCTTGAAACAAGAATTAACAAAGCATATGCGTACGCATCCAGATGATGAGTCATATGCTTGTACAATATGCGGAAAAGCTGTAAAAAAGCTCTCCATGCCTGCACATAAAAGGACGCATTCAGATTTACGGCCATTTAAATGTGATATTTGTAATAGAACATTCAGAGAGAGTAAAACTCTAGCAGATCATAGGAGGACTCACACTGGTGAAAAACCACACGAGTGCAGATTATGTGGTCATGCATTTATACAAAAGACGGCCCTCAATCAACATATGAAGTGTCACAACAAAGACAAAAATAGTGAAATACAGATTCACGTGCGTAATCATGCTGGTATAAAACCTTACTCTTGTAACCAATGTGGCAATAAATTTGCCCGAAAGTCAGATTTACAAAGCCACATTATGAGACACGGACCAAGAAATATTTCATGTAGTCATTGTCCCTTAAAATTCTATTTAAAACAAGATAAGGACAAGCACGAGCGGAGACATTTTGAAAAGAAGTTGTATAGCTGTGAAATATGTGGAAAGTCTTATAAAACTCGATCGTTTATGGCCGAACATAAAAGAGTGCATACTGGTGATAGACCATATCAATGTGAAGTTTGTAGTCAATCGTTTAGGTCAACGGGAGCTCTACGGAGTCATAAGATGATACATACCGGCGAACGACCATATAAATGTCGAATTTGTGATCGAGGATTTATACAAAAGACACCTTATAATCGCCATATGAAATCTCACATTAGAATGAACTCTAATGAACATGAAATAAATTCAGAATTGAATTCTGATGCAACACAAGATAATAATGGAAATATAGGTGTGTTGAGTATAATACGGAAACCTCTCCCTCATTTACTTGAGTTTCAATCCATTGCAAATATCAACAATAAAAATACAGATAGTGAAAACACTTTTAAAATTGAAAAAAGTGATACAGAAGAATTGATGGACATATCATAA
Protein Sequence: MDNTTVDASNDDKTELKWLTSDTVEKICRACLRTGDLLLNLHNENFATSFTDCTQLQIEENDGLPPCLCQSCFNILGHFYNFKLLCYKSDAALRQHFFEKDPIKTEIIEVEETENKNFELQIELPVNDNDNESFSSSPSKDRAPHFLFEPSVPKPSDSLENEIFKCKICPKFYKTFTGLNKHMVLHNQMKAFLEKRRSQNLIASNREPTEVQERIKIEIPEFDIQEHNDDNLQDDLLSDNDDKSFSNKASNDFHHDDLELLKQQSSVLSSKKKLLSKCTICPKTFKSSRGLKNHLIFHTEANPISDNQTPTVFKNEDTDVQTVQAADLQTEVVQNNIIKDYSCEICSMCFCLKQELTKHMRTHPDDESYACTICGKAVKKLSMPAHKRTHSDLRPFKCDICNRTFRESKTLADHRRTHTGEKPHECRLCGHAFIQKTALNQHMKCHNKDKNSEIQIHVRNHAGIKPYSCNQCGNKFARKSDLQSHIMRHGPRNISCSHCPLKFYLKQDKDKHERRHFEKKLYSCEICGKSYKTRSFMAEHKRVHTGDRPYQCEVCSQSFRSTGALRSHKMIHTGERPYKCRICDRGFIQKTPYNRHMKSHIRMNSNEHEINSELNSDATQDNNGNIGVLSIIRKPLPHLLEFQSIANINNKNTDSENTFKIEKSDTEELMDIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -