Stie009581.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- -
- Assembly
- GCA_008973525.1
- Location
- Contig141:292458-294998[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0041 0.25 11.6 1.5 1 23 288 310 288 310 0.96 2 13 9.2e-06 0.00055 20.0 5.3 1 23 316 338 316 338 0.98 3 13 1.9e-06 0.00011 22.2 0.7 1 23 344 366 344 366 0.98 4 13 0.0004 0.024 14.8 0.1 1 23 372 394 372 394 0.97 5 13 0.43 25 5.3 0.1 1 23 400 423 400 423 0.90 6 13 0.002 0.12 12.6 0.2 1 23 429 452 429 452 0.96 7 13 0.029 1.7 9.0 0.5 1 23 458 478 458 478 0.94 8 13 4.1e-05 0.0024 17.9 2.0 1 23 484 506 484 506 0.99 9 13 0.048 2.8 8.3 2.2 1 21 512 532 512 534 0.95 10 13 4.1e-05 0.0024 18.0 1.6 1 23 540 563 540 563 0.98 11 13 0.18 10 6.5 0.4 2 23 571 595 570 595 0.91 12 13 0.0012 0.069 13.4 0.3 1 23 601 624 601 624 0.96 13 13 1.7e-06 0.0001 22.3 1.2 3 23 632 653 630 653 0.96
Sequence Information
- Coding Sequence
- ATGGAGTCCTCTTATGATGTATCCGATACAGACTTTTACCCAAAGGAAAATAATAATTCAGAGGAGAATGAAATTATATATAAGGATGTAAATGAAGTTAAAACTAGACCATTGATACAAAAATTATTCGATAATGATTACAGTAAGAAAAGAAAACGTAACGAGGAAACATATGATAGTTTATTTTCAGTTGATAATATTGAAGATGATATCTTAATCAATAGTGTCAACCCTGATATTATCGAAAATGCAATAGAAAATCTTTCAAATTCCCCTAATGCATTAGATCAAAAGACTAAATCATCATATAAGCGCAGAAAAACTGTAAAAAAGACTAAAAATCTGTCAAAAAAGAATGGTTCTAATATGAAGATGAATAAGACATTTTCTTTCACTGATGTTCTGTTTGATGATAAAATGGAAATTAAAGCCGAACCAATCGATTATGAATATGCTATGGATCTCGCCAATAACGAAATGTATTCTGGACCCGGAAGTAGTCAATTAAATGAAGAACAAATGGTAGTGAGACCGGACTGGCCTAATCTTGATGACATGATAATGAGAAATGATACTTTTGAAAAAGAAATGATTAATGATACCGAAAAACTAATTCCACAAAAAGAATCAATCAATGTCGTCATTACACCTGATCAGTGTCTAGATACAGATTTGAATAACAAACTGGAAAGCATTCAGGATCAAGAGAAAGAAGCAAAGGCTAAAAAAAATAGCACAGTTCCAGATGCCCTTCTTATCGGTGGTCCTGATAAACGCAAGACAGTGAAAGTCATAGCAGATGCAGTGATTGAAGAATTAGAGAAAACTGGAAAAAGAAGGATAAAAGTTGAAACTCGCGGGTATCCATGTAAAAATTGCGGAGAAGTTTTTGCAACACATCAAGAACACAAGGTTCATTTGATTTCTCATCAGACAGAAACAAGACACAAATGTCCAGAATGTAGCAAATGTTTCACTCGATCACACGATTTAGTTCTCCATGCTCGTGTTCACTCTGGAGAAAGACCTTATGAATGTGAATTTTGCAAAAAAGCTTTTAGTCAAAAAATTAATATGATAAGACACGTTAGAATACATACAAACGAGAAACCTTTTATATGTAACATATGCGAAGAAAGCTTTTTGGATCAAGGTTATTTAGCAAAACATGTTCGATTACACACGGGAGATAATCCATATATTTGTTTGATTTGTAAATTAAGATTTCCGGAACTGCAATTAATGAAGGAACATTCAGCAAGAGAACATACTGAAGGTCCTGTATTCAATTGTAACGTTTGTGGTGCCGGTTTCCCCGATAGAACCTCAAAACGTACACACATTATGAATGATCATTCAGAAGCCAGACCGTTTATTTGCGACGATTGTGGTAAAAAATTAAAAGTTCAAATAATCAAACATTTACGAACACACTCAGGACTACGCCCGTATCGATGCAAATATTGTAATAAGACCTTTGCCGGCGAGAGCAGTTACAGTTTGCATGTAAAACGTCACGTAGGAATCAAACAACACGAGTGTCCCGTGTGCACTACGCTTTTTTATAATGCCGGCATACTGAGACGGCACATGCGCTGCCATTCAAACGATAGACCGTACCAATGCGAACTGTGCACACGACAGTTTAAATCGTCCGATTCAAGAAAAAGACACATTAAGATAGTTCACGAGCGCAAATGGAAGGAATGGAAGTGCGAATTCAAAGGCTGCATGGAAAAGTACGCCGCCAAAGCGAACATGTTGAGGCACATGCGAAGCTTTCATTATAGTATGAAACCATATGTGTGCGACGTATGCGAGACTGGATTTACGAGCAAAGGGAGTATGCTTACGCATTCTAAGGTTCGTCATTCTTCCATTAGAGACGTTCATTGTAAGGAGTGCCCGAAATCGTATGTGGACGAAGTTTCTTTAAATAGGCACATGAGAACCAAACATCCCGATAAATACTATTAA
- Protein Sequence
- MESSYDVSDTDFYPKENNNSEENEIIYKDVNEVKTRPLIQKLFDNDYSKKRKRNEETYDSLFSVDNIEDDILINSVNPDIIENAIENLSNSPNALDQKTKSSYKRRKTVKKTKNLSKKNGSNMKMNKTFSFTDVLFDDKMEIKAEPIDYEYAMDLANNEMYSGPGSSQLNEEQMVVRPDWPNLDDMIMRNDTFEKEMINDTEKLIPQKESINVVITPDQCLDTDLNNKLESIQDQEKEAKAKKNSTVPDALLIGGPDKRKTVKVIADAVIEELEKTGKRRIKVETRGYPCKNCGEVFATHQEHKVHLISHQTETRHKCPECSKCFTRSHDLVLHARVHSGERPYECEFCKKAFSQKINMIRHVRIHTNEKPFICNICEESFLDQGYLAKHVRLHTGDNPYICLICKLRFPELQLMKEHSAREHTEGPVFNCNVCGAGFPDRTSKRTHIMNDHSEARPFICDDCGKKLKVQIIKHLRTHSGLRPYRCKYCNKTFAGESSYSLHVKRHVGIKQHECPVCTTLFYNAGILRRHMRCHSNDRPYQCELCTRQFKSSDSRKRHIKIVHERKWKEWKCEFKGCMEKYAAKANMLRHMRSFHYSMKPYVCDVCETGFTSKGSMLTHSKVRHSSIRDVHCKECPKSYVDEVSLNRHMRTKHPDKYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -