Stie006126.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- -
- Assembly
- GCA_008973525.1
- Location
- Contig540:271016-281839[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.012 0.72 10.2 1.4 2 23 266 287 266 287 0.96 2 12 0.009 0.54 10.6 1.7 1 23 434 457 434 457 0.91 3 12 4e-05 0.0024 18.0 2.9 1 23 463 485 463 485 0.97 4 12 0.0041 0.24 11.7 0.1 1 23 493 516 493 516 0.89 5 12 5.9e-06 0.00035 20.6 2.3 1 23 521 543 521 543 0.97 6 12 2.8e-05 0.0017 18.5 1.0 1 23 549 571 549 571 0.98 7 12 4e-06 0.00024 21.1 1.7 1 23 577 599 577 599 0.98 8 12 4.4e-08 2.6e-06 27.3 1.1 1 23 605 627 605 627 0.99 9 12 0.00036 0.021 15.0 4.3 1 23 633 655 633 655 0.98 10 12 0.055 3.3 8.1 2.1 2 23 662 683 661 683 0.96 11 12 2.4e-05 0.0014 18.7 0.7 1 23 689 711 689 711 0.96 12 12 4.8e-07 2.9e-05 24.0 2.7 1 23 717 739 717 739 0.98
Sequence Information
- Coding Sequence
- ATGGCGGAAGGGCTGAGCGCATCGGCGGTGTGCCGGCTGTGCGCCCACGAAGACGCCAACGGTTCCCAGCTATTCGGCGAACCCCGTCCGCTGGCAACCCTCCTCAACACTTACTTGCCTCTCAAGGTCATAGATGATAAAAAATTGCCTCGCACGATATGCCCGGGTTGCAACATACAATTAGAAGCAACTGCTCAATTTTTTGAACTGGTTATAGACGGACAGAAAAAATTACGTGAAATATTACAAACACAAAATGTAACAACACAAAATGAAGTTTTATCCCTCGGAACCAGTGAAGATATTTTTCAAGCCTCCGAAAATGGCAGCATTTACCCATCAAACCATGCTCTCTCTTTACGAATGGAAGGACTTGAAAAACCTCGACGCAAAAGAGGTCGACCATCAAAGAAATCTTTACCGCCATCTGATAACGAACCACATAAAACTGAAGTAGAATTAATCGATCACAATAAAGAAGAAGTGGGAGACGAAGCAACTGAAGTACAAGGCAAGAGAAGACGACGGATAGTACCAAAACGTTTTAATGAAGCTGTGCAGGGAAAAGAACTAGATAGAATCTTTCGTGAAGAAGGTGTCACTGATGATGAATGTGATGTTGAAAATAGTATTCATGGCTTACAAATATCCTCGGAAAAGGAACCTCATAACTCAAGCAAATATAAAAGCAATGTTATTGGACACATGGAGACCTTAGATGGAAAGAATCTAGGACAACTTATTATCAAAAAATCTAATAAAACTGGTCAAAAAGGCCGCTGTCGTCCTGTTCGTCAGTGCACCATCTGTTCTTTAAAATTCAACACGTTAAGTCGCTATATGGCACATATTGCACATCATTCTCAGTTTCAACCAGCGAAAAAGAATCTCGAACAAACTCCTCCAAAAAATACAGTTGTATTAGAAGATGTGCTGGAAGAATTTTCAAGCATAAATACTATAACTGATGATCATCCAAAGTTACAAATGTCAAAAGAAGAATACTCTGATAACCAGTATTATAATTCTGGACCCTCTATGCCGGATATTTCATCAGAGATTGTTAATAGTGATTTACTGAATGAAAAGGAAACAACAAACTCGGCTTTACTATTTGATCCATCTGATGATATTTTTATGAAACCAAGTGTAACTGCAGAAATCGATACAAAACATTCTAACATTACAGTGGATACATTGACAATACTTAACAATGATGAACAAGAAACGCCTATTATTAATGAAAATTCTGATAAAATAAATGATGATCAAAATATTAAAGAACCGAGCTCTTGTAAATTTCAGTGTGCCGAATGTGGAAAAATTTTTAATAGCAAACAATACTGTGATATTCATTTAAAGATTTCACATCTTGGCATTCGCCCCTACAAATGTCACCAATGCAATAGAGAATTTGCATATAAAATTAGTCTACAGCGTCATCTTGTATCACACATACCTAAAGCTGATAAAGGATTTGCCTGTGACATATGCGGAAAAGTATTAAATCATCCATCATCGGTTATTTATCACAAAGAGGCTGAACATAATGGACGTCGATTTATATGCAATAAATGCGGCAAAGGCTTTAAACATCGACTTCTCTTGCAAAGACATCAATTAGTCCATTCAGATAATAGACCATTTTCATGCAAAATTTGCAGTGCAACGTTTAAAACGAGGCCTAATTTAATAAACCACTCACAAACTCATTCGGGAATAAAAAAATTCTCTTGCGAAATATGCAATCAAACTTTTGCACATAAAACAAGCTTAACTTTACACATTCGTTGGCATTTAGGTCAAAAGCCTTATAAATGTACAGTGTGCAGTAAAACCTTTAGCCAAAATGGAAATTTAAGTGAACACATGAGAATTCACACAGGCGAAAAACCATTCACTTGTTCTATTTGTCAAAGGAGCTTCACAACATCATCTCAACATCGGTTGCATATGGAAAGGCACAAAAGTGAACGACCTTGGCGATGTCAAGATTGTGGAAAAGGATTTTTATATAAAGAGTCTTGGAAATGCCACATCAGAAGACATCGTGGTGAAAAACCTTTTGCCTGTCAAGATTGTGGCCGAAGATTCACAGAGCGCTGGGCGTTGCGGAAACACAACAGGCTTCATACTGGTGAAAGACCATTCTCTTGCAATGTATGCGGCAGAGCTTTTGCAGATTGTTCAAACTTGACCAAGCATAAAAAAACACATACCACTGAGAAAAAGGCAACGGCTGATTTTATCCCGTTGGATGACTCAGTCAATTCAGTATTAGATAATGTTAATCACGTCCTTTGCGTAACGTTTAATACAGAAGAAGATAACGATGGTCCTCCAACATTTCACATTGTCAATGAGAGCGAAATTAATAATTTGAACTCACTATACGAAACGGAAACAAATCTCTTGGAAAATGAGAATAATACTATTGTAAATGATCCTGAAACATCTGTACCTGAATCTCACACTTCTAATACTATTTTTGATCAATTTGTTGATGAAGAAGGAAATCCAATACAGTTCACTTTGCAAGATGGCACTCATTTTGCAGTTACATCCACCGGGGGAAATTTTCTACAGATAGAAAATGAGGAGCTCATTTTAAATGCAGACATGGAAGTAGCAGAAGAGGGTGACGGACTTTCGTGCTCTGAAAATAAAATGGATTCTGAAGTGCAAACTGTGAAATTTCTAACAGCTCTCGACGATAATGCCCTCTCTCAATATTTTACTATAACATAG
- Protein Sequence
- MAEGLSASAVCRLCAHEDANGSQLFGEPRPLATLLNTYLPLKVIDDKKLPRTICPGCNIQLEATAQFFELVIDGQKKLREILQTQNVTTQNEVLSLGTSEDIFQASENGSIYPSNHALSLRMEGLEKPRRKRGRPSKKSLPPSDNEPHKTEVELIDHNKEEVGDEATEVQGKRRRRIVPKRFNEAVQGKELDRIFREEGVTDDECDVENSIHGLQISSEKEPHNSSKYKSNVIGHMETLDGKNLGQLIIKKSNKTGQKGRCRPVRQCTICSLKFNTLSRYMAHIAHHSQFQPAKKNLEQTPPKNTVVLEDVLEEFSSINTITDDHPKLQMSKEEYSDNQYYNSGPSMPDISSEIVNSDLLNEKETTNSALLFDPSDDIFMKPSVTAEIDTKHSNITVDTLTILNNDEQETPIINENSDKINDDQNIKEPSSCKFQCAECGKIFNSKQYCDIHLKISHLGIRPYKCHQCNREFAYKISLQRHLVSHIPKADKGFACDICGKVLNHPSSVIYHKEAEHNGRRFICNKCGKGFKHRLLLQRHQLVHSDNRPFSCKICSATFKTRPNLINHSQTHSGIKKFSCEICNQTFAHKTSLTLHIRWHLGQKPYKCTVCSKTFSQNGNLSEHMRIHTGEKPFTCSICQRSFTTSSQHRLHMERHKSERPWRCQDCGKGFLYKESWKCHIRRHRGEKPFACQDCGRRFTERWALRKHNRLHTGERPFSCNVCGRAFADCSNLTKHKKTHTTEKKATADFIPLDDSVNSVLDNVNHVLCVTFNTEEDNDGPPTFHIVNESEINNLNSLYETETNLLENENNTIVNDPETSVPESHTSNTIFDQFVDEEGNPIQFTLQDGTHFAVTSTGGNFLQIENEELILNADMEVAEEGDGLSCSENKMDSEVQTVKFLTALDDNALSQYFTIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -