Stie004278.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- -
- Assembly
- GCA_008973525.1
- Location
- Contig310:134477-144924[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.3e-05 0.0014 18.7 0.7 1 23 163 185 163 185 0.95 2 14 0.00062 0.037 14.2 1.0 3 23 193 213 191 213 0.97 3 14 8.8e-05 0.0052 16.9 0.1 1 23 286 308 286 308 0.98 4 14 7.5e-05 0.0044 17.1 0.1 2 23 372 394 371 394 0.94 5 14 0.0013 0.079 13.2 0.2 1 23 426 448 426 448 0.94 6 14 0.0018 0.11 12.7 0.3 2 23 454 476 454 476 0.95 7 14 0.0018 0.11 12.8 1.9 3 23 484 505 483 505 0.94 8 14 0.0005 0.03 14.5 6.0 3 23 515 535 513 535 0.96 9 14 0.00039 0.023 14.9 1.1 2 23 541 562 540 562 0.97 10 14 1e-05 0.00062 19.8 0.2 1 23 570 592 570 592 0.98 11 14 0.0032 0.19 12.0 0.2 3 23 600 620 598 620 0.97 12 14 0.00019 0.011 15.9 0.3 1 23 626 648 626 649 0.95 13 14 0.13 7.7 6.9 0.1 3 23 665 685 663 685 0.97 14 14 0.0012 0.073 13.3 0.5 1 23 930 952 930 952 0.98
Sequence Information
- Coding Sequence
- ATGGACGGAGGAAGCTTCACGCTGAGATGGGATGACGACTCTCGGGGTCAGGGTGGCGGAATAATTTCGGAAGAAGTGATTCCAGCATTGGATACCGTGAACTCGCATCACTATTCAATGGATGGCCATCAGTCTCATATGAATCCTGATGTTATCATTCCGGACACGGATCAAATTGCTGCTGAGAACCTAATTTTTCTGGCTCAAGATATCGTCGGACATATGAACAGCTACAGTGATCAAGGTCAACATTATAGCAGCGATAATTTTACTGTTGACCAAGTTGACCTCGATCATGCAGGAGAGATTGAATGCCAGGTCACGGAGGAAGTGATCACTGATGATTGGGTACAACCTGGAGGACAGGAGAGAGTGGAAGTACCATTGGAACAGTTGGCTTTGGTGAATGTAGAAATACACAATGAAGGCAATGATATTGATGTTCCTTTGCCCACTGATCAAGATGAATATACAGCTATGCGGCCTTATCCTTGTGATTTTTGTTCGCGGCGATTTCGTAAAAAAGCTAATCTCATGAACCACATGGTGGCCCATCAAAATGATCGGCCTTATGGATGCAACTTGTGCGGCGCAAGATACGTTCGGAAATGTGATCTGATGAACCATCTGAAAGTTCACGCTTATGTTCCCGATGATGAGCTTATTGAAGAACCGCCAAAACGCAGGAGTCGCAAACGTTCTGCGCAATCTTCAAATGCTGAAAAATCTTCTACATATTCTGATAAAACTGCCGTAGCCGCTAGAACTCAACAGTACGAAGGACCAGTCAGTGGTAATTCAAACGCAGCAGCGTCTTTAAGACAACGCTATGAAGCTACTGACCCCAGTCGTCCTTTTGTCTGTCAGCACTGCGGCGTCGGTTTTGCACGAGAAAAAGCATTGGCATCTCATGCGAGGATACATGGAGGAGATTCACCGTTGGAATGTTGTGTATGTGGCGAGCTTTGTTGGAGCAGAGAAAATTTAATTTCTCATACCCATTCCAAACATCCGCATAAATCTCCACAGGCGTTTCCAGTATATGAAGCTGATGCAACGTCTGAAGAATCTCTCGCTGAAGACGATGAAGGAAGCCAAAGTTGGGTGGAGTTAATATGTAAAGATTGTGGAGCCGGATTTCAACGTGCTGATCTCCTTCAAAGGCATACACGAGCTGCCCACACCCATTTGAAAAAAGAAATAGAAGATGTAGATAAATCCAAAGAATCTGAGAACTCTACAATGGAAGTTGTTGAAAATTGGGAAGGGATGGAACATGCTTGTAGTGTATGCGGAGAACATTTTCGGGATGCTCTTGAACTATTAGCCCATGCTGAGAGTCACGCTCGTCGTAATAACAGATGTATGCATTGTGGTGAAAAATTTGCCGATAATTCAATGGTTACAGAACATGTGATATCGGCTCATCCAAATTTACCACCAAATTCGTGTTTATTCTGCGGAAGAACTTGTAATGATCAACGCGGACTGAATAAACACATAGCTTCTCAGCATGAAATTCCTCCCGGGAAAATGCTGTTTTGCTCTAAATGTGGCAAACATTTTCATAGTAAAGCCAGATTAAAACGACACATGGAATCTCATCGGGATAAAGGAGTTACATGTAATGAATGCGGAGAAAGCTTTGAAAATGGACGCTCACTTATGAATCATCGCCATTCTCATAAAGGCACGGCTGGTAGACAATTCCCATGTCTTGAATGTGGGAAAACTTTTGGATCAAGAAGCTCACAACAAATTCATATTAGAATACATACAGGAGAGCGCCCTTATGGTTGTCGATTTTGTTGGAAGGCATTTGCTGACGGTGGAACGTTACGAAAACACGAGCGGATACATACAGGTGAAAAACCTTACGCTTGTGCAATATGTCCCCGTGCATTTAATCAGAGGGTAGTTTTGCGAGAACATGTAAGATCTCATCATTCTGGTCCCGATTCTCGTCATGGAACAGGAGCAGCACCTTATTGGTGTCCAGTGTGTGATCGTTTAATGACATCTTCGGTAGAATTAGTTCATCATATTATTCAACATTGTGATAATAATACAGCTTTAAAAAGACAACCACAAACTGGACCACGTAAATATAAACGTCGACGCAAATTACAACAAGTCGACCTCAAAACAAGCCCGACAGGTCCAAAGAATGATTCAGATCATAGTTTATCAGAATCAGAACTTCCATCGAGTTTAATGAAGAAACCGGTACCAGTCAGAAAAAGTCGGACGGATAAACGTTCGATATCACCCCTCGAAGATAATAATGATTCTTTACAAAACACATCGAAGAGTAGTGCGGACTCTAGCGCGGGAGGAAGTGCTCGTACTAAAGGAAAATTGAAGCCCAAGCGTGCTGTGGAAATACCAACAAGGCCTAAAATGATTCATACTCAGCGTAATAAACCATCGGACGCGAGTACAACCGTGACTCGAAGAAAAGGACGCAGCGCCAATGCACTCGTCACCACATGTGTGCCTATTTCCGACGAAAGAATACGCCCTCGAACAAAAAATGTTACATATCACGACGGAGTGGGGCGATTGCCCGCAGCCACGTTTCCTTCCTCGGTTAAACCCGAACCGGAAGGAGACATCAATGCCGATTTGCGTGCTATATTGAAGGATCCTTTGACTATTGAATATGTCGATGAACAATCTACGATAGAAAATCTTAAAAGTGAACCGCACGAGGATGAAAATACGAACTCGTATTTTAGTGTGAAGGAAGAAACCGAAGAAACTGTTACTATCGAGGAAGACGGGCCTTTTAGATGTGAAATGTGTAGTGAATCCTTTGGTTTGCACGAAGAATTAGTGACTCACGTTCGAGTACACATATAA
- Protein Sequence
- MDGGSFTLRWDDDSRGQGGGIISEEVIPALDTVNSHHYSMDGHQSHMNPDVIIPDTDQIAAENLIFLAQDIVGHMNSYSDQGQHYSSDNFTVDQVDLDHAGEIECQVTEEVITDDWVQPGGQERVEVPLEQLALVNVEIHNEGNDIDVPLPTDQDEYTAMRPYPCDFCSRRFRKKANLMNHMVAHQNDRPYGCNLCGARYVRKCDLMNHLKVHAYVPDDELIEEPPKRRSRKRSAQSSNAEKSSTYSDKTAVAARTQQYEGPVSGNSNAAASLRQRYEATDPSRPFVCQHCGVGFAREKALASHARIHGGDSPLECCVCGELCWSRENLISHTHSKHPHKSPQAFPVYEADATSEESLAEDDEGSQSWVELICKDCGAGFQRADLLQRHTRAAHTHLKKEIEDVDKSKESENSTMEVVENWEGMEHACSVCGEHFRDALELLAHAESHARRNNRCMHCGEKFADNSMVTEHVISAHPNLPPNSCLFCGRTCNDQRGLNKHIASQHEIPPGKMLFCSKCGKHFHSKARLKRHMESHRDKGVTCNECGESFENGRSLMNHRHSHKGTAGRQFPCLECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAICPRAFNQRVVLREHVRSHHSGPDSRHGTGAAPYWCPVCDRLMTSSVELVHHIIQHCDNNTALKRQPQTGPRKYKRRRKLQQVDLKTSPTGPKNDSDHSLSESELPSSLMKKPVPVRKSRTDKRSISPLEDNNDSLQNTSKSSADSSAGGSARTKGKLKPKRAVEIPTRPKMIHTQRNKPSDASTTVTRRKGRSANALVTTCVPISDERIRPRTKNVTYHDGVGRLPAATFPSSVKPEPEGDINADLRAILKDPLTIEYVDEQSTIENLKSEPHEDENTNSYFSVKEETEETVTIEEDGPFRCEMCSESFGLHEELVTHVRVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -