Stie001167.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- -
- Assembly
- GCA_008973525.1
- Location
- Contig384:162415-173740[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.026 1.6 9.1 0.1 3 23 230 249 229 249 0.95 2 19 5.3e-06 0.00032 20.7 2.1 1 23 254 276 254 276 0.99 3 19 0.015 0.9 9.9 0.7 1 23 281 304 281 304 0.91 4 19 0.0002 0.012 15.8 0.7 2 23 311 332 310 332 0.97 5 19 7.1e-05 0.0042 17.2 2.3 1 23 338 360 338 360 0.99 6 19 0.0034 0.2 11.9 1.0 1 23 366 388 366 388 0.98 7 19 3.1e-05 0.0019 18.3 1.4 1 23 394 417 394 417 0.96 8 19 0.017 1 9.7 1.2 3 23 605 624 604 624 0.97 9 19 5.1e-06 0.0003 20.8 4.4 1 23 629 651 629 651 0.99 10 19 0.23 14 6.2 0.1 2 22 657 677 655 679 0.83 11 19 0.099 5.9 7.3 0.1 2 17 686 701 685 702 0.92 12 19 2.2e-06 0.00013 22.0 1.7 1 23 751 773 751 773 0.99 13 19 0.075 4.5 7.7 0.2 2 23 963 983 963 983 0.94 14 19 0.00013 0.0077 16.4 2.8 1 23 988 1010 988 1010 0.99 15 19 0.01 0.61 10.4 0.8 2 23 1016 1038 1015 1038 0.93 16 19 0.021 1.2 9.4 0.2 2 23 1045 1066 1045 1066 0.97 17 19 0.0004 0.024 14.8 2.3 1 23 1072 1094 1072 1094 0.99 18 19 0.011 0.63 10.3 0.8 3 23 1102 1122 1100 1122 0.96 19 19 0.00012 0.0071 16.5 1.6 1 23 1128 1151 1128 1151 0.96
Sequence Information
- Coding Sequence
- ATGTCAGATTTTGAAAATGTTTGTCGGCTTTGTCTCGGAGGTCAGCCTACATTGGATATATTTGGTACATTAATCGTCAGTAAAATTGAATCTTGTTGCACGTTACAGATGCAAGAAAATGATGGTTTGCCTGGTCGTATATGTTTTACGTGTGCCCATACTTTAGACGTTGCTGTAAATTTTAAAATACAATGTGAAGAAAGCGATAAAATGTTACGAAGGAAATTGAATATCGCTTTTCCGAGTAATGTTAAATATGAAAGTACAGGAGTTAAAGTTGAGGATCCTTTAATTCTATATGATATTCCCGAAATCAAAGATGAAACGGTTTCAGTTAAAGATGAAGATTATTGTGAGAATGATTTCAACAATGCGTCACCGTTTGACGATTATATAGATGATTCTATTAAATCGGAGAACTCATCAGACTTTAAGAGAAATAGCAATGATAAAAGCTTAAGCAAAAATAAAAAGAATGAATGCACGAGAAATAGCAAAAAAGTAATGGTGAATTTTGCTAATATAACAATTAAAAGTAGTGAGCCATCGAGTTTGAAATCTCACAAAAAGAAATCAGTAATTAAGAAAAACAACAATAAAAATGGTCTGAGTATAAAATCGACCAAAAGAAAACGATGCAATGATAATGTACAAAATGTTGTGAAGAAAAAGTCCTTCATTGGACTATGTCCTTTTTGTGGAGAAGTTTATCCACGTGCTTCATTTTATAAGCACGTCAGAACTCACAATGAAAAGCCATTTAAATGTGATATTTGTAATAAGGGTTTTTATCATAAGGGGAAATTAATAACCCATATTAAAATACACGGTGAAAAAGAATTCCCATGTGAAATCTGCGGAAAACTATTCAAATCGACATACGATTCTCATAGACACGTCGAAATTGTTCATAAACGATCCAGAGCCGTGGAGTGTTCAACTTGTGGAAAAAAGCTTGCAACGAAGTTCGGTTTAAAGATGCATTTAAAAACCCACACTGGTGAGAAGGCGTTTGAATGCGACGTCTGTAAACAGAAATTTACCTTTAGATATACGATGATTCTTCATATGCGCACACACACCGGAGAAAAACCTTACGTGTGCAGATTTTGTGAAGCTAAATTTTCAGTACAAAAAACATTGAAAGAGCATGAAAGGCTACATACTGGCGAAACGCCGTATAATTGTCCCGTATGCACTAAAGGATTTTCGCAATTATCTAATATGAAAAGTCATTTCAGAAATAACCATAGAGGTGTCGAATTCAATTATAAGTATATGTATGAGAATGATGGTTTACCTAGCAATATATGTTCCAATTGTGCTAGTACACTGGAACTCGTTGTGGAGTTCAAAAATAAATGCGAAGAAAGTGATAAAATTTTGAGAAGCAAAATTAACATAGCGTATCCAAGTGATATGAAAACTGAATTAGGTATAATAAACACCGAAAATCCTGTAATACTATATGATATGCCTATGATTAAGGATGAAACATTTTTAAACGACGACGAAAATACTGGAACGGTAGTAGAGATTACATCTTTGTCTAATAAAAGTGATACGTTAAAACAAGATAAATTATGTTGCAATGAAAGAACCGATGATAAGTGTGAGAAAATTATTAATTTAGACAATAATTTTGTAGATACAGTAACAAAAAATAGTAATATATCGAATTTAAACTCTAATAAAACACCAATTCAAAGAAATAGAAGAAATAACACCAAAATAAAATCATCCAATATAAAAAAGATAGATTCTAACAAGACAAAGAAGGAAACGATGAATAGAAAAATATTCACCGGTATCTGTCCGCATTGCGGATTAAATTTTCCGAAAGGCACGTTCTACAAACACGTCAAAACGCACAAAGACAAACAGTATAAATGCGACGTTTGCGGCAAATGTTTTCATCTAAAGGGCAATCTAACGCTGCATATTAAAACGCACGGAGAAAAAGAGTGTCCCTGTGCGATATGCGGAAGACTTTTTATTTCGACTTATGAGGCATTCCGACACGCAGAAGCTGTTCATAAACGATCTCGAGCTGTTGAATGTACGGAATGTGGAAAAAAACTTGCTACAATTTCTAATCTTAAAGAAATTAAGAAAAATACGTATATAATAATACTTAATTATAGCACTCAGTTGCCAGATTGTCATAATGATAGTTCAGAATCACGCCAGAACACAACTATTAAATTATTCACATGCATGCATATTAAAACGCATACTGGTGAAAAACCGTTTGAATGTGAAATATGCAATCAAAAGTTTGCATTTAAGTATACTTTAACGCTTCATATGCGAACGCACACTGGAGAAAAACCGTATGCTTGTCGCTTTTGTGATAGCAGATTTTCAATAAAACGAACAATGTTTGAAAATGACGGTCTACCTAGTAATATATGTTTCACTTGTGCAAACACATTAGAAATTATTGTGGATTTCAAAAAGAAATGTGAAGAAAGCAATGAAATCTTAAAGAAAAAACTGAACAGCGGACACCCAATAAAAATTGAATCAACCACCAAAGAGTCTGATGAACCTGTAATACTTTATGATGTACCTTTAATAAAACAAGAAATACACTCAAATGATGAGGATGATTGTGATGCTAAAATTTCATGTACTTCAATATCCCATGGACATAATGAAATGAAAATAATTTCTAATAATAACGATGTATCAGAAAGAAATCTTGGAAATAATAAGCAAAACAAGAACTTTAAAATTAAATTTGGAGATATAAATAGAAATATTGACACATCTAATCTTTTTAATTCTAATGAAGAATCTACGATGATTAATAAAAAAACAAAAAATAACAAATCCACCAAGGAATCAAATAAAAAAATAGTCAATAGAAAAATATTCACTGGCGTGTGTCCATTTTGTGGATTAACTTTTCCCAAAAACCTATTTTATATACATCTCATCACGCACGAGGACGAACGATACAAATGTGATATTTGTGACAAATATTTAAAATCAAAAAGGCATTTAGGCTTACATATCAAAACACACAATGAAAAGGAATGCCCGTGTTCCGTATGCGGAAAACTTTTCAAAACCACATACGAAGCATATCGACACGCAGAAACTGTTCATAAACGATCTAACGCTGCTGAATGTTCCGTGTGTGGAAAAAAGCTTGCTACGCTTCCTATTCTTAAAAAGCATTTAAAAATACACACCGGCGAAAAAGCCTACGAATGTGATATATGCAAACAGAAATTTACATTCGGATACACTTTGACTCTTCACAAGCGAACGCACACTGGAGAAAAACCGTACGGATGTAGATTTTGTGATGCCAGATTTTCGGTAAAGAAAACATTGACGGAGCATGAGAGATTGCACACCGGAGAGACGCCTTATTATTGTCCCGCTTGTAATAAAGGCTTTTCACAATTATCAAATATGAAAAGCCATTTTCGATACAATCACAAAGAGTTAGAATTTATAAATCACTACAGCAGAGCTAATGAACGCCATAAAAAAGTTGTATTATAA
- Protein Sequence
- MSDFENVCRLCLGGQPTLDIFGTLIVSKIESCCTLQMQENDGLPGRICFTCAHTLDVAVNFKIQCEESDKMLRRKLNIAFPSNVKYESTGVKVEDPLILYDIPEIKDETVSVKDEDYCENDFNNASPFDDYIDDSIKSENSSDFKRNSNDKSLSKNKKNECTRNSKKVMVNFANITIKSSEPSSLKSHKKKSVIKKNNNKNGLSIKSTKRKRCNDNVQNVVKKKSFIGLCPFCGEVYPRASFYKHVRTHNEKPFKCDICNKGFYHKGKLITHIKIHGEKEFPCEICGKLFKSTYDSHRHVEIVHKRSRAVECSTCGKKLATKFGLKMHLKTHTGEKAFECDVCKQKFTFRYTMILHMRTHTGEKPYVCRFCEAKFSVQKTLKEHERLHTGETPYNCPVCTKGFSQLSNMKSHFRNNHRGVEFNYKYMYENDGLPSNICSNCASTLELVVEFKNKCEESDKILRSKINIAYPSDMKTELGIINTENPVILYDMPMIKDETFLNDDENTGTVVEITSLSNKSDTLKQDKLCCNERTDDKCEKIINLDNNFVDTVTKNSNISNLNSNKTPIQRNRRNNTKIKSSNIKKIDSNKTKKETMNRKIFTGICPHCGLNFPKGTFYKHVKTHKDKQYKCDVCGKCFHLKGNLTLHIKTHGEKECPCAICGRLFISTYEAFRHAEAVHKRSRAVECTECGKKLATISNLKEIKKNTYIIILNYSTQLPDCHNDSSESRQNTTIKLFTCMHIKTHTGEKPFECEICNQKFAFKYTLTLHMRTHTGEKPYACRFCDSRFSIKRTMFENDGLPSNICFTCANTLEIIVDFKKKCEESNEILKKKLNSGHPIKIESTTKESDEPVILYDVPLIKQEIHSNDEDDCDAKISCTSISHGHNEMKIISNNNDVSERNLGNNKQNKNFKIKFGDINRNIDTSNLFNSNEESTMINKKTKNNKSTKESNKKIVNRKIFTGVCPFCGLTFPKNLFYIHLITHEDERYKCDICDKYLKSKRHLGLHIKTHNEKECPCSVCGKLFKTTYEAYRHAETVHKRSNAAECSVCGKKLATLPILKKHLKIHTGEKAYECDICKQKFTFGYTLTLHKRTHTGEKPYGCRFCDARFSVKKTLTEHERLHTGETPYYCPACNKGFSQLSNMKSHFRYNHKELEFINHYSRANERHKKVVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -