Stie002007.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- Ik
- Assembly
- GCA_008973525.1
- Location
- Contig041:994607-1010748[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0002 0.012 15.7 6.5 1 23 677 699 677 699 0.97 2 13 6.4e-06 0.00038 20.5 0.6 3 23 713 733 712 733 0.98 3 13 0.0068 0.4 11.0 2.1 2 23 742 763 742 763 0.98 4 13 0.00027 0.016 15.4 0.5 1 23 769 791 769 791 0.97 5 13 4.7e-06 0.00028 20.9 1.3 1 23 797 819 797 819 0.96 6 13 1.3e-05 0.00079 19.5 6.5 2 23 826 847 825 847 0.97 7 13 4.9e-05 0.0029 17.7 0.8 1 23 853 875 853 875 0.98 8 13 6.8e-06 0.0004 20.4 1.1 1 23 881 903 881 903 0.98 9 13 0.00032 0.019 15.1 0.4 1 23 909 931 909 931 0.98 10 13 3.8e-05 0.0022 18.1 2.2 1 23 937 959 937 959 0.98 11 13 1.9e-05 0.0011 19.0 1.2 1 23 965 987 965 987 0.97 12 13 1.8e-05 0.0011 19.1 0.2 1 23 993 1015 993 1015 0.98 13 13 2.7e-05 0.0016 18.5 0.9 1 23 1045 1067 1045 1067 0.97
Sequence Information
- Coding Sequence
- ATGCCGCAGGACGAAAGCGTGGGGCCTGAAGAGACCCCTATGTCTCAAAGGTTGACAAATGAAGATTTCCGACGGCTATTGATGACTCCGAGAAGTGCTCACACTCCTGCTGGACCTCATCCCGCGGGATCGGTACGAGAAGCAGTCGCTAATGCAAGTGCAATGCCGCCACCCGAGACCGAGGATAAAGGCGAACTGAGACGAAAGAAGAAATCATATTATGCAGCTCTGAAAAAGCAAGAAGATAATAAATTGGCAGAGTTAGCGGAAAAATATCGCGATCGTGCTAGAGAAAGACGCGATAATGCCAATCCTGATTATACTGCCGAAGATCCAATATCTAATACGAGCAATGCTTATAGAGCCGTTGCTCCAGATTTAAAATCTGGCTTGGATGCTAAAGAAAGAAGGCGTCAAATGATTCAGGAATCTAAATATTTGGGTGGTGATATGGAGCACACTCATTTGGTAAAGGGCTTGGATTATGCTCTTTTACAAAAAGTTCGTTCAGAAATTCACAGCAGAGAATTAGAACAAGAGCAACAACTCGAACAACTCGCAAGCGGCGTCGATAAGGAAAAATTGGACAAAGAAAAAAAAGAAAAAGAAGAAGAAGATGAAATGCAGTTCAAAACCACAGTAGGACGAGATGTATACAAAACTTTATCAGCTTTCAGGAGTAAACACGTTGAACGAAATGAAATGTTTACTCCGGGCCGTATGGCGTATGTCATTGATTTGGAAGATGAGAGTGGAACCGGTGAATCAGACATACCGACGACTCTCATACGAAGTCGTGCAGAAGTACCGACAATGACACCAGGTCAACCTACCCTTACGACCAATGATATTGTTATAAATAAACTGGCGCAAGTTCTGTCATATCTACGACATGGAGCCCGTCACAGCAATAAAACGCGAAAAAACAAAGATAAAAATATAAAACTCTCCAAAATAAATGATGATTCCATATATGGTGAAATTGGCGATTATATGCCAACGCGTTCGACTTCAGATAGACGAGATGATCACAAAGATAAGGGCAGAGGGAGGGACGAATCGGATAAGAAAAAATCTTACTTTGATAAACCGCTCGAAAAAGAAAAAGAAGAAGGTCTTATAGTATTCTATAATGTTATTTTACGCATATTATTAGGTAGATTTCTTTCAATACTGTATTTTAAATTTTCAGTCCCTGGTACTAAAGTGCGAGCTGCAACTCTACTTTCTCGCCTGGCAGCTGAGCCCGAAGGTTATGCTGAATGTTATCCTGGATTACGGGAAATGGATGATGCCATTGAAGATTCTGATGATGAAGCTGATTATACTAAAATGGACATTGGAAACAAAAAAGGACCTATTGGTCGATGGGACTTCGACACGCAAGAAGAATATTCTGCGTATATGAATCAAAGAGAAGCGTTACCAAAAGCTGCATTTCAATATGGTGTAAAAACTATGGATGGAAGAAAGACAAGGAAAACAAACAAAGAGAAAAACGATAAAGCAGAACTTGATAGAGAATGGCAACAGGTATCGGACACTGACGGTCTGCCTACTCAATTATGTGGCCAATGCGTTCAGCAAGTGTCTCGATGTTACTCTTTCAAACAGAGGGTAGAGAGCTCCGATTCACATCTCCGAAAGTATATAGAACAACATCCAGAGAAAGCCTTAATAAAAACAAATACCGAAAACAAATTCACAGTACAACAGGGTAACAATGAATTGCAATTCCAGTATATTGATAACTCCCAATCTCAAGCGTCTGCAGAGTCTACAGGCTCTGCAACTGTATTGGAAGAGTTTTATATTACTGCAGATCAATCGGGAGAAACTACAATTACAACGACTGTTCAGAATCCCCAAGAAGTCAAAGCTGATGAAAAATCTGCTTCGGAAAAATCTGATAAGGCCGATGATTCAAAAGTGGTTGTCAAGCAACAAGTAACTAGTGATATGGAAGACGAAGATAGCTATTTAGAACTCGCTACATTTCAAGCTTCAGTATCTGTAAATCCAGGACGTCATATTTGCAATCTTTGTCATAGAGAATTCAAACATGCCAAATGGTTAAAAATGCATATGCGTATGCATTCCAATTGGATTAAGGCTAATTGTAAAAAACCTCCTATGTGCACAATTTGTCAACGAACATTTAAAGGACCCGGAATGCTAAGATTGCATATGCGTACCCACGAGGAGAGACCACAACGTCAGCCGACTTGTTCTATTTGTAATAACGTTTTTAAAACAAAAACTATTTTATATCGTCATCGACAAACTCATTTTGGGGAAAAAATTCATCCTTGTACCATTTGTGATCGTACATTTCTTAGTAATTATGCTTTACAAGCTCACCTCGCTCGTCATCGTGGTGAAAAACCGCATGCGTGTGAAACATGCGGAAAATCCTTTTACAATAGTACAGATCTTAAGGTTCACGTAAGGTTGCATACAGGAGAAAAGCCTTTAACGTGTGGAGAATGCGGTAAAACATTCCGACGTCATTCCACTCTTTGTCAACATCAAAAGAAACATAGAGGGATTAGAGATCATGTTTGCCCTTATTGCACCAAAGCATTTTTTGAAGTCTCAAAGTTGACTGCCCATCTACGTGTACATACTGGTGAAAAACCATACGAATGTACTTATTGTTCGCGTCGATTTGCTCAGCAGTCCGCTTTAATATATCATAAGCGGATTCATACCGGTGAAAAACCATATCCGTGCATGCAGTGTGATGCTCGGTTTACAACATCATCCGCGAGGAATAATCATATGGTCACCCATACCGGTATTAAAAAATATCCATGCACAGTTTGTAATAAAGGATGCACGAATCGCACTGAACTGCGCATTCATATGACGAAACATACGGGAGAAAAATTATTCCCTTGCAATGAATGTGATCTGCGCTTTTCTACTGCTTCATATCTGGCTATTCATAAGCGTCATCACACCGGTGAAAAGAAATTTGTGTGCGGTGTATGCGGAAAAGGTTACGTGGAATCAGGTTCATATAAAAAGCATCTTCGTACGCATACGACCGCTGAAATTGAAGCTTCCCAAGCAACTGCAGCACAAAATCCATCACAGTCTACGACGCCACCTCAAATTGTTACCAAAAACTATGCTTGCACTCTGTGCTCCAAATCCTACACACAAGGACAAAACCTTAAAAAACATATGGCATCACATGGCCTTCTTAATCCATCTGCTTTAGAATCTGTAAATAATGCTCAGCTGCAACAGCATCAAATTCGACAACAAGCGCAACAATCACAACCCCAACAGTCTCAACAGCAACAACCGCAGCAGCAACAGCAGCAACAACAGCAGCATCAGCAACATCAGCAGCACCAACAGCATACACATCATCAACAGCAGCAGCATTTAGTGCAGCAACCTCAACAATTACAAGTCCAAACTATACAAATTCATCCTCAACATGTATCCACGCACCATGGTCAACCAATACAAATACATACCGTTGGAGTACACCAAGTGCAACAACAGCAAGTGCACGTTGCAGCGTCTGGATGTCAGCCAGTTCAATTGCCCAATATTGTTCAGGTTCCACAAGACGCAACGTGTATCAGTCAACAAATTGCCATGGGGCAAATACAAGAACAATCCGATAGATTACAATTTCAAAATTACCCGTTGCAGGCAGTTACGAACGTATTAAGTGGAGTGGTTCCGCAAGGACAGCCTGCATATTACATTGTTGTAAATAATTCAAATATCAAGAAAGATCCGTTGAGCACCGAGGGCGAAATGTAA
- Protein Sequence
- MPQDESVGPEETPMSQRLTNEDFRRLLMTPRSAHTPAGPHPAGSVREAVANASAMPPPETEDKGELRRKKKSYYAALKKQEDNKLAELAEKYRDRARERRDNANPDYTAEDPISNTSNAYRAVAPDLKSGLDAKERRRQMIQESKYLGGDMEHTHLVKGLDYALLQKVRSEIHSRELEQEQQLEQLASGVDKEKLDKEKKEKEEEDEMQFKTTVGRDVYKTLSAFRSKHVERNEMFTPGRMAYVIDLEDESGTGESDIPTTLIRSRAEVPTMTPGQPTLTTNDIVINKLAQVLSYLRHGARHSNKTRKNKDKNIKLSKINDDSIYGEIGDYMPTRSTSDRRDDHKDKGRGRDESDKKKSYFDKPLEKEKEEGLIVFYNVILRILLGRFLSILYFKFSVPGTKVRAATLLSRLAAEPEGYAECYPGLREMDDAIEDSDDEADYTKMDIGNKKGPIGRWDFDTQEEYSAYMNQREALPKAAFQYGVKTMDGRKTRKTNKEKNDKAELDREWQQVSDTDGLPTQLCGQCVQQVSRCYSFKQRVESSDSHLRKYIEQHPEKALIKTNTENKFTVQQGNNELQFQYIDNSQSQASAESTGSATVLEEFYITADQSGETTITTTVQNPQEVKADEKSASEKSDKADDSKVVVKQQVTSDMEDEDSYLELATFQASVSVNPGRHICNLCHREFKHAKWLKMHMRMHSNWIKANCKKPPMCTICQRTFKGPGMLRLHMRTHEERPQRQPTCSICNNVFKTKTILYRHRQTHFGEKIHPCTICDRTFLSNYALQAHLARHRGEKPHACETCGKSFYNSTDLKVHVRLHTGEKPLTCGECGKTFRRHSTLCQHQKKHRGIRDHVCPYCTKAFFEVSKLTAHLRVHTGEKPYECTYCSRRFAQQSALIYHKRIHTGEKPYPCMQCDARFTTSSARNNHMVTHTGIKKYPCTVCNKGCTNRTELRIHMTKHTGEKLFPCNECDLRFSTASYLAIHKRHHTGEKKFVCGVCGKGYVESGSYKKHLRTHTTAEIEASQATAAQNPSQSTTPPQIVTKNYACTLCSKSYTQGQNLKKHMASHGLLNPSALESVNNAQLQQHQIRQQAQQSQPQQSQQQQPQQQQQQQQQHQQHQQHQQHTHHQQQQHLVQQPQQLQVQTIQIHPQHVSTHHGQPIQIHTVGVHQVQQQQVHVAASGCQPVQLPNIVQVPQDATCISQQIAMGQIQEQSDRLQFQNYPLQAVTNVLSGVVPQGQPAYYIVVNNSNIKKDPLSTEGEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -