Basic Information

Insect: Stenopsyche tienmushanensis
Gene Symbol: -
Assembly: GCA_008973525.1
Location: Contig533:577661-580553[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.9e-06 0.00023 21.2 4.5 1 23 167 189 167 189 0.97

2 12 8.3e-05 0.0049 17.0 0.4 1 23 196 218 196 218 0.96

3 12 0.014 0.83 10.0 1.2 1 23 239 261 239 261 0.97

4 12 1e-07 6e-06 26.1 0.8 1 23 271 293 271 293 0.98

5 12 3.9e-07 2.3e-05 24.3 2.3 1 23 299 321 299 321 0.99

6 12 5e-05 0.003 17.7 1.0 3 23 329 349 328 349 0.98

7 12 2e-06 0.00012 22.1 0.4 1 23 355 377 355 377 0.95

8 12 0.00064 0.038 14.2 2.1 1 23 383 405 383 405 0.97

9 12 2.8e-06 0.00017 21.6 2.9 1 23 411 433 411 433 0.98

10 12 1.2e-05 0.00069 19.7 1.2 1 23 439 461 439 461 0.98

11 12 3.7e-07 2.2e-05 24.4 2.4 1 23 467 489 467 489 0.99

12 12 9.2e-05 0.0054 16.8 0.8 1 20 495 514 495 517 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.9e-06	0.00023	21.2	4.5	1	23	167	189	167	189	0.97
2	12	8.3e-05	0.0049	17.0	0.4	1	23	196	218	196	218	0.96
3	12	0.014	0.83	10.0	1.2	1	23	239	261	239	261	0.97
4	12	1e-07	6e-06	26.1	0.8	1	23	271	293	271	293	0.98
5	12	3.9e-07	2.3e-05	24.3	2.3	1	23	299	321	299	321	0.99
6	12	5e-05	0.003	17.7	1.0	3	23	329	349	328	349	0.98
7	12	2e-06	0.00012	22.1	0.4	1	23	355	377	355	377	0.95
8	12	0.00064	0.038	14.2	2.1	1	23	383	405	383	405	0.97
9	12	2.8e-06	0.00017	21.6	2.9	1	23	411	433	411	433	0.98
10	12	1.2e-05	0.00069	19.7	1.2	1	23	439	461	439	461	0.98
11	12	3.7e-07	2.2e-05	24.4	2.4	1	23	467	489	467	489	0.99
12	12	9.2e-05	0.0054	16.8	0.8	1	20	495	514	495	517	0.94

Sequence Information

Coding Sequence: ATGTTCAGCGGGGGCTCAGTCCCGCTCGCCAGTACATACACTCATTGTACAAGACTGCCGGCTGAGAAAGACGACGGACTCTCATCGAAACTGTGCAGTCAGTGTGTGAAACAATTGACCATCACAAATAATTTCATAAGACAATGCGAAAAGAGCGAAGAGAGATTCCGAAAAATGTTGATCGAAGGAAACGCACAATTGCAGATAAAATTGGAACCGGAGGAAGGTCAGGATCACAATTTTCAAAATCCCGGAAGTGACGACTGCAAAGAGGACAATTCCGACGAAAGTCCTCCTTCTAAAAGATTAAGATTATCCCGAACAAAATCTGATGAAGCCAATCACGAGGTCAAATGTGAAGACAACGAAAGCGAAGATTCGGGCGATGCGGACATTTCATACGGCGACCATGAAGTCAAATTTGAACAGGAATTCGAAGAGGGCGAGAGGATCGATTATTCTCGTGACGCTCCTCGCTCGGACGACAAACTTTACAAACACTCTTGCGAAATATGCCACAAGACCTTCGCCAAGAGATCCGGCCTCACGAGGCACATGTCGAATCACGACGCCGAGACGAAACCGTTCGAGTGCGCCGAATGCTTTCGCCGCTTCAAAAGAGAAGACCTCCTGATCCGGCACGCCACCATCCACGCCGTCGGCATAGGACTGAACAACAGTTTCGAGTCTAAAGACGACGAAAATGTCGGTAAATTCGTATGCGATCAGTGCCCCATGGAGTTTACTTCGAGGAACGGCCATTCGAGCCACATGAAAATACATAAAAGTGATAAAAACTCCAAAAAACAGTTTCAGTGCGACGAGTGCGGAAAATCTTTTCCCGTTAGGGGCCACCTGAATAGACACGTAAAGATTCATTCGAAAGTGAAACAATACAAATGTACATTGTGCGATAAGCAATATTCGCGTCAAGATCAGTTGCTCACGCATATGAACAAACATAACGGAGTCAAGCCGAATATATGTCCCTTTTGTAACAAAGGGTTTGCTCAAATATGTAATTTAAAAGATCATCTTCGAATCCACACTGGAGAAACGCCGTTTTTATGTTCCATCTGTGGAAAGGCGTTCAACAGCGGCTCTAATTTAAGGCAACACGTTCAAAGACACACCGGAATAATGCCGTTCAGCTGCAACCTGTGTCCGAAAAAGTTTATCAGCAAAGGGGAGCTAACCTGTCATATAACGTCGCATTCCGGTGCTCATCCTTTTGTCTGTGATACGTGCGGGCACTCGTTCACCAAACCAAATTCTCTTAAAAAACACAAGCGTATACATTTAGGCATCAAACCGTTTGAATGTGATGTTTGCTTTATGAGGTTTGCATATAAAGACCTCTTGAAAAGACATTACAGGATTCACACTGGCGAAAAACCATACAAATGTAAATATTGTGAAAGGTCTTTTATACAAAGCAATGATTTAGTTAAACACACTCGGACGCACGTGGGTGACAATATATACGAGTGCAAAATATGTACAGAGAAATTCAGACTTCAGAGTGATCTCAAAAATCACTATCCGATACATTATATCAAGACTGACAACGATTTGGACGACCCAAAAGTGAACAAGCATTCAGTCGCGGACGATACGGTCATTAAAATCGCAAAAATCGAAGATACAGTAACAAAAATAGAAAACGAACAAGCGCTGTAA
Protein Sequence: MFSGGSVPLASTYTHCTRLPAEKDDGLSSKLCSQCVKQLTITNNFIRQCEKSEERFRKMLIEGNAQLQIKLEPEEGQDHNFQNPGSDDCKEDNSDESPPSKRLRLSRTKSDEANHEVKCEDNESEDSGDADISYGDHEVKFEQEFEEGERIDYSRDAPRSDDKLYKHSCEICHKTFAKRSGLTRHMSNHDAETKPFECAECFRRFKREDLLIRHATIHAVGIGLNNSFESKDDENVGKFVCDQCPMEFTSRNGHSSHMKIHKSDKNSKKQFQCDECGKSFPVRGHLNRHVKIHSKVKQYKCTLCDKQYSRQDQLLTHMNKHNGVKPNICPFCNKGFAQICNLKDHLRIHTGETPFLCSICGKAFNSGSNLRQHVQRHTGIMPFSCNLCPKKFISKGELTCHITSHSGAHPFVCDTCGHSFTKPNSLKKHKRIHLGIKPFECDVCFMRFAYKDLLKRHYRIHTGEKPYKCKYCERSFIQSNDLVKHTRTHVGDNIYECKICTEKFRLQSDLKNHYPIHYIKTDNDLDDPKVNKHSVADDTVIKIAKIEDTVTKIENEQAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -