Stie010557.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- -
- Assembly
- GCA_008973525.1
- Location
- Contig315:120196-132120[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 8.1e-05 0.0048 17.0 2.5 2 23 158 179 157 180 0.94 2 14 0.0009 0.054 13.7 0.3 2 23 185 207 184 207 0.91 3 14 0.00099 0.059 13.6 0.2 2 23 229 251 228 251 0.93 4 14 0.00027 0.016 15.4 1.0 2 23 324 345 324 345 0.97 5 14 0.0024 0.15 12.4 4.9 2 23 352 373 351 373 0.96 6 14 3.4e-05 0.002 18.2 2.3 2 23 481 502 480 502 0.97 7 14 0.0017 0.1 12.8 1.4 2 21 509 528 508 529 0.93 8 14 0.0005 0.03 14.5 2.0 1 23 536 559 536 559 0.97 9 14 1.1e-05 0.00062 19.8 3.9 1 23 580 602 580 602 0.98 10 14 4.5e-07 2.7e-05 24.1 1.7 1 23 609 631 609 631 0.98 11 14 9.2e-08 5.5e-06 26.3 2.0 3 23 644 664 642 664 0.96 12 14 3.7e-08 2.2e-06 27.5 0.9 1 23 670 692 670 692 0.99 13 14 3.2e-07 1.9e-05 24.6 1.6 1 23 698 720 698 720 0.99 14 14 0.0012 0.07 13.3 0.1 1 23 726 750 726 750 0.93
Sequence Information
- Coding Sequence
- ATGCTTAAGACGCGTCATACAATCTTTGGTCACATCGCTCGCAGAGACGACGGTAATCTTGAAATGCCAATGGTTATAGAGGGAGACGGATTGCCGAAACATATCTGTTGCAAATGCCTGAAAAATGTAACATTGGCATTTAGTTTTAAATTACAAGCTGAGAAAGCCGATGCCAAATTGAGAAATTACATTGCTAGAAAGCGTTCAGATGTGCCTTTGGAATCGAGTGCTTCTATTAAGGAAGAGCATTGCATTCAAGACCAGCCGGATATGGTTGTCAAGACTGAAATTAGAAATGGAGAATTTTCAAATGAATCCCAAAATAATGATATTTATGAACAGTCAATGGATAATAGTTTTAATCAATCAGACGATTCTGAAGATGACGTCAAGCCATTAAAAGATTTAAAAGAATTAGCCCTTAAAATTGCCAATGAAGATGCGAAAAAGAAGAGTCGAAAGATTGTCTTGCCTTGTGAGTTTTGCAGTAAAAAGTTTGTAAGCCTATCAAATCTAGAAAATCACAAACAAAAACATCATGCAGGTTGTGTTCAATGTGATATTTGCTTAAGGGCATTCACAAAATCAACATATCTCGAACGTCATAAAATTGCTTCACATTATAAATCTACTCCCAGTTTACCGGCAATAAATAAAGATGGCGAACAAATGGATCTACAGATAACGTGCAAACTGTGTAGTTTTACTTTTGCTCGCGAAGAACAGCTTATTTCTCATATTGCACTCTCACACAACGGTCCTAGAAAACGCGGACGACCGTCCAAAAAGGATTTACTATTAAGTAACTTGAGAATAAAGAAAATATTAGATACAATGAATATTAAGAGTGAAAATGATGATATGAGAGAGCTTGAAGTTTCGGAAACGCACTCTGATTTGTTTGATGCAATACCACGAAAGAAAGTTCATGAAAGTGAACTATTTTCGGATATAAAAAATTGTGATAATTATTGTAATTTATGTAATAAGCCCTTTGCTTCTTTTAATTTGTATGAAAAGCACATTAAAAAACATCTAGTTCATAAATTGTTGATATGTAAAATATGCGATAAAACATTCAAATGCAATACTAGTCTAAAAAAACATTTTCAAAGCCACGAAGAACTTGAATCGTTTGCTAATATTGACTTAAAAACGAAGCTATCCTTATTAGAAAATAGTGAAAAGTTCACAAGTGAAGATGCTCAAAATTTATCCGATAGTGATATTATAAAATTGATCATAGCTGATATAAAAGCCGAAAAGTTCAATTCATATACTGGTGAAATAAAATCAGAAATTGAACAAGAGATAATATCCGATAACGAAGACTGTGTATCTAACAATGGAGATAGTGAATCTATTGAAAATAAGGCAAATACTTTATTTATCAAACCTAAATTCAAAAAAAGTCTACTACGGAAATATAAAAGTAGTCTTAAATGTTCACTTTGCGGACAGGAATTCACAAAGACTAACCATCTAATGAGGCATATGTCAGTTCACAACTATGAATACCCAGATACTTGTGATTTATGCAATAAGCCTTTTCCAAATAAAGATTTCTTATTGAAGCACAAGTGCATGCAGAGTGCTACAAAATCATATAGGTGCAACTCTTGTAGTATGAGATTTACTTACGAAATGTCTTTAAATAAACACATCCTTCGACAACATAAAGGTGAATCAGTCTCGATAAATTTCCTGGACCCGCTTTTTCTTAAAAAAGAAAAAACATTTGTTTGTCAAAATTGCAATAAAAGCTTTTACAGACAAGAGCATTTGGACAAACATGCAAAAACGCACCTACCGCACGAGAAGAAGTTTGAATGCTTAGTGTGTCAGAAGAAATTCAATAGGAAAGACAACCTGAGATCACACTTAAGAGTTCATGAACCGAATAAAGATGATCTCGATTCGAATTGTCTTTGCGTTTACTGCGGTCGATCTTTTTCAAATTCATCCAATCTTATTGTGCATATGCGCAGACACACTGGAGAGAAACCGTACAAGTGTGATCTATGCGGAAAAGGATTTTCCCGGTCTAATAAATTGGTTAGACATATGCGAATTCATACCGGTCAAAGACCGTATAAATGTACATATTGCGATAGAGCTTTCACTCAATCCAACGACTTGACGTTGCACGTCAGAAGACACACCGGTGATAAACCTTATTCGTGTGGAGTATGTGGTGCGCGATTCATTCAGGGTACCGCATTACAAAGTCACCGTCGTATGCAAGGACACTATGAGCAGGGCGCACAAACAGCGCCGTTTCCATTGAATTCTGTCAATAATCCCAATAGAAGTAACACTGTCCGAAGAATTGCTTCTAGCGTGGAAACAAATTTAAAACTCAAGCCGCTGGATTTGCTACGACCGTCAACGAGTCTGGGTCCTGAAGCAACAACGAGTGGCACATCTACTGAAACTAATAGAACTATAGAAGAAGGTCCAAATTTACATACAACTCACAGCATGGGAAGGGCGCTTATTCAAAGCTGTGAAAACGGAGTTACAGGTTTTCTCACGGGAACTAGCATTTTAGACGGCCCTACTCCAATTCCGTTATTTTCTTTAACGCAATTCAACCCGGGCTATAATTGA
- Protein Sequence
- MLKTRHTIFGHIARRDDGNLEMPMVIEGDGLPKHICCKCLKNVTLAFSFKLQAEKADAKLRNYIARKRSDVPLESSASIKEEHCIQDQPDMVVKTEIRNGEFSNESQNNDIYEQSMDNSFNQSDDSEDDVKPLKDLKELALKIANEDAKKKSRKIVLPCEFCSKKFVSLSNLENHKQKHHAGCVQCDICLRAFTKSTYLERHKIASHYKSTPSLPAINKDGEQMDLQITCKLCSFTFAREEQLISHIALSHNGPRKRGRPSKKDLLLSNLRIKKILDTMNIKSENDDMRELEVSETHSDLFDAIPRKKVHESELFSDIKNCDNYCNLCNKPFASFNLYEKHIKKHLVHKLLICKICDKTFKCNTSLKKHFQSHEELESFANIDLKTKLSLLENSEKFTSEDAQNLSDSDIIKLIIADIKAEKFNSYTGEIKSEIEQEIISDNEDCVSNNGDSESIENKANTLFIKPKFKKSLLRKYKSSLKCSLCGQEFTKTNHLMRHMSVHNYEYPDTCDLCNKPFPNKDFLLKHKCMQSATKSYRCNSCSMRFTYEMSLNKHILRQHKGESVSINFLDPLFLKKEKTFVCQNCNKSFYRQEHLDKHAKTHLPHEKKFECLVCQKKFNRKDNLRSHLRVHEPNKDDLDSNCLCVYCGRSFSNSSNLIVHMRRHTGEKPYKCDLCGKGFSRSNKLVRHMRIHTGQRPYKCTYCDRAFTQSNDLTLHVRRHTGDKPYSCGVCGARFIQGTALQSHRRMQGHYEQGAQTAPFPLNSVNNPNRSNTVRRIASSVETNLKLKPLDLLRPSTSLGPEATTSGTSTETNRTIEEGPNLHTTHSMGRALIQSCENGVTGFLTGTSILDGPTPIPLFSLTQFNPGYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -