Basic Information

Insect: Stenopsyche tienmushanensis
Gene Symbol: -
Assembly: GCA_008973525.1
Location: Contig533:584645-595136[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.7e-06 0.00022 21.2 2.9 1 23 196 218 196 218 0.98

2 13 5.8e-05 0.0035 17.5 2.1 1 23 226 248 226 248 0.97

3 13 2e-06 0.00012 22.1 1.2 1 23 255 277 255 277 0.99

4 13 0.0009 0.054 13.7 6.8 1 23 307 329 307 329 0.98

5 13 2.3e-06 0.00014 21.9 4.0 2 23 337 358 336 358 0.96

6 13 9.8e-06 0.00058 19.9 4.1 1 23 364 386 364 386 0.99

7 13 5e-06 0.00029 20.8 0.7 1 23 392 414 392 414 0.97

8 13 5.1e-06 0.0003 20.8 1.5 1 23 420 442 420 442 0.95

9 13 0.00012 0.0073 16.4 0.4 1 23 448 470 448 470 0.98

10 13 0.00021 0.013 15.7 0.2 1 23 476 498 476 498 0.97

11 13 3.7e-05 0.0022 18.1 4.1 1 23 504 526 504 526 0.98

12 13 6e-07 3.5e-05 23.7 1.4 1 23 532 554 532 554 0.99

13 13 2.1e-05 0.0013 18.8 0.4 1 23 560 582 560 582 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.7e-06	0.00022	21.2	2.9	1	23	196	218	196	218	0.98
2	13	5.8e-05	0.0035	17.5	2.1	1	23	226	248	226	248	0.97
3	13	2e-06	0.00012	22.1	1.2	1	23	255	277	255	277	0.99
4	13	0.0009	0.054	13.7	6.8	1	23	307	329	307	329	0.98
5	13	2.3e-06	0.00014	21.9	4.0	2	23	337	358	336	358	0.96
6	13	9.8e-06	0.00058	19.9	4.1	1	23	364	386	364	386	0.99
7	13	5e-06	0.00029	20.8	0.7	1	23	392	414	392	414	0.97
8	13	5.1e-06	0.0003	20.8	1.5	1	23	420	442	420	442	0.95
9	13	0.00012	0.0073	16.4	0.4	1	23	448	470	448	470	0.98
10	13	0.00021	0.013	15.7	0.2	1	23	476	498	476	498	0.97
11	13	3.7e-05	0.0022	18.1	4.1	1	23	504	526	504	526	0.98
12	13	6e-07	3.5e-05	23.7	1.4	1	23	532	554	532	554	0.99
13	13	2.1e-05	0.0013	18.8	0.4	1	23	560	582	560	582	0.98

Sequence Information

Coding Sequence: ATGGAGCCGGGCACAGGCTCAGGCTCAGGCTCGGGCTCGAGCGCGGACCCGCCGGGAGAGTCTCGCTCCCTGCCTCCGCTTCCGTCCCCGCCTTCGCCTATGCCCTCGACTCCGCCCCCGCAGGCGCACCCCGCGCTCCCCGCGCTCCCGCTGCTGCCCCTCGACCCCACCACTTACTGCCGCACCTGCATGGATCGAAACTCCGACCCCAACAACTACTTCACCAACTTCATCACTGTCCCCATCGTCGGCGAGATGATTACCACCTGCACCAATATACAGATCAACGACGGTGACGGCCTACCCGAGCAGGTCTGCCATGCCTGCATTTCCAGTCTTACTCTAGCCTATGATTTTAAAAAAAGATGCGAAAAAGCCGACGACGAACTGAGAAAGCTCTTCAGATTCTACGTCATGAAATCCGAACCTTTCATAAAACAAGAACCGGCTGATATTAAAACGGAAGAGTGCGATTTCGAAGCAGAAGAAGAAGACGACGATGATGACTTTAGAAGCTCCGACTATGAACCGATCAAGATCAAAAAGAAACTATCGAAGAGGGCGTTCGATGGAGTCAACCGCAAGCACGAATGCAAAGTCTGCAAGAAGGCATTTCAGAAGCCGAGCAAGCTTATCAGACACATGAAAAGCCACTCGAAAGAAGCGAACAAGATTCATCCGTGCGACACTTGCCACCGAATATTTGACCGGGCGTCGAAACTCGACCGGCATATTCAGATCCACGATCCGGACTCGAAGCCGTACGAGTGCCTCGTTTGTCAAAAGAGATTCAAGCGGCAAACGCTTCTCCTGAGTCACATGATAACCCATCAAACGGCGACGGTCAACGGGGAGGGCTCCGATCGAAAAGTCGAAGTCAAGGACGAGGGAATAGAAATAAAACTCGAAAGTGACAAGTATTGTTGTTCGCAATGCCCGATGATGTTCGAGTCGTGCCATTCGCTCTCGGCTCATATGCGAAAGCACAGAATTAAAGATAGAATATTATCATGCCTTATTTGTAATAAAGTTTTTAAAAAATCAAGCCATTTAAAAAGACACGAGAAGACCCACGAAGACAACAGACCTTTCAAATGCAGCCAATGCTCAAAGTCTTTCACGCAGGAGAGGCACCTCTTGGAACATATCAATAAACACAAGGGCGTTAAACCCCATTCTTGCCCCGTCTGCGCCAAAGCTTTTTCTCAAATGAGTACATTGAATTCTCACCTGAGAGTACATACTAGAGAGAAACCCTTCTTGTGCGCTACCTGTGGAAAACGGTTCGACAGCAGCACAAATTTAAATCAACATCTCAAAAGGCATAGAGGGGAAAAGACATTCTATTGTACTCTGTGTCCTGGAAGATATGTTAGTAAGGGTGAACTTCAATCCCATATGTCTACGCATACAGGCGCCAGGCCGTTTGTGTGCGACACTTGCGGCGCAGCTTTCACCAAGACCAATTCATTAGCCAAACACAAATTGATACATTTAGGAATTAAACCGCACGAATGCGATGTGTGCGCCATGAGATTTAACAGTAAAGATCATCTCAAACGACATTATAGAATACATACGGGTGAAAAACCCTATAAGTGTGATTATTGCGAACGAGCATTTACGCAAAGCAACGATCTCGTTAAACATACGAGATCACATTTAGGAGACAAGATGTATAGATGTACATTGTGTCCTGAAGGATTTAGATTAAAAACAGAACTTAGAAAACATATCTCCATACATTTTATTGAGAAAACGGCACCAATGGAAGAATCGTCCAGTAAGATGTTTGATCAACCTACTAAGATGGAAACAGAGTTTAAAATTGAACCCGGATTTGAGGTCTTACCGATCATTCAGCCGATACCGATTGAAGTGATTACAGAAGTCATTACTTCTGATGGTCTACAACAAAAATCTATTCCTCTCTTTGCGTCTTCGCCACAAGAATCTATGCATCTGTGCTCCTCGCCGACATCTTTGACATTTTTATCAAGAAATAATATAAGTTAA
Protein Sequence: MEPGTGSGSGSGSSADPPGESRSLPPLPSPPSPMPSTPPPQAHPALPALPLLPLDPTTYCRTCMDRNSDPNNYFTNFITVPIVGEMITTCTNIQINDGDGLPEQVCHACISSLTLAYDFKKRCEKADDELRKLFRFYVMKSEPFIKQEPADIKTEECDFEAEEEDDDDDFRSSDYEPIKIKKKLSKRAFDGVNRKHECKVCKKAFQKPSKLIRHMKSHSKEANKIHPCDTCHRIFDRASKLDRHIQIHDPDSKPYECLVCQKRFKRQTLLLSHMITHQTATVNGEGSDRKVEVKDEGIEIKLESDKYCCSQCPMMFESCHSLSAHMRKHRIKDRILSCLICNKVFKKSSHLKRHEKTHEDNRPFKCSQCSKSFTQERHLLEHINKHKGVKPHSCPVCAKAFSQMSTLNSHLRVHTREKPFLCATCGKRFDSSTNLNQHLKRHRGEKTFYCTLCPGRYVSKGELQSHMSTHTGARPFVCDTCGAAFTKTNSLAKHKLIHLGIKPHECDVCAMRFNSKDHLKRHYRIHTGEKPYKCDYCERAFTQSNDLVKHTRSHLGDKMYRCTLCPEGFRLKTELRKHISIHFIEKTAPMEESSSKMFDQPTKMETEFKIEPGFEVLPIIQPIPIEVITEVITSDGLQQKSIPLFASSPQESMHLCSSPTSLTFLSRNNIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -