Stie014196.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stenopsyche tienmushanensis
Gene Symbol
-
Assembly
GCA_008973525.1
Location
Contig411:38312-61235[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0023 0.13 12.5 0.5 1 23 173 196 173 196 0.95
2 16 0.00012 0.0072 16.5 2.9 2 23 203 225 202 225 0.90
3 16 0.0071 0.42 10.9 0.6 3 23 241 261 239 261 0.96
4 16 0.026 1.5 9.1 1.3 1 20 267 286 267 288 0.94
5 16 0.0068 0.4 11.0 0.1 2 23 295 317 295 317 0.95
6 16 0.00069 0.041 14.1 0.2 1 23 452 474 452 474 0.98
7 16 2.8e-08 1.7e-06 27.9 1.3 1 23 482 504 482 504 0.99
8 16 6.1e-06 0.00036 20.5 2.5 1 20 510 529 510 532 0.96
9 16 0.0021 0.13 12.5 1.0 1 21 538 558 538 561 0.90
10 16 0.012 0.7 10.2 0.5 3 23 573 600 572 600 0.91
11 16 4.7e-06 0.00028 20.9 2.8 1 23 606 628 606 628 0.97
12 16 8.8e-07 5.2e-05 23.2 0.8 1 23 634 656 634 656 0.96
13 16 7.3e-06 0.00043 20.3 0.6 1 23 662 684 662 684 0.98
14 16 1.5e-06 8.9e-05 22.5 1.3 3 23 692 712 690 712 0.96
15 16 2.1e-06 0.00012 22.0 0.7 1 23 718 740 718 740 0.99
16 16 0.0022 0.13 12.5 1.0 1 23 745 768 745 768 0.97

Sequence Information

Coding Sequence
ATGCAGCCGTTGTTTAACACTTGTGGTGAAGCGAGGGAGCCTCGTCTTAATCAAATGCTCATGTCAAGCACTCAGATACAGGTTGCAGAAAATGATGGACTGCCGTGCCAAATTTGCGTCCACTGTACATACCAGCTCTCATCGGCATTCACGTTCAAGCAAATGTGCGAAAGATCCGATGCCAAACTTAGAAATTTCGTTTCAAAAACTAAATCTACAACTAAAATGCTTCCATGTCAATCTTCAGTTCAAAACCTTGAAGCTCCTGTTAAACAAGAAGGAATAGCATTACAGCAAAATGCCAACAATGAAATTATCGATTTTAACACGATGTTTAACCACGACATGAATGCTATAAAAATGGAACGTGATAATAGTGAAAGTCAATCAACTAAATGTGACGATGATAAGAAATCCATAGGGCTTAAAAATAGTCTTAGTGAAGGGCCTTTAAATTTAATAAATAGCATTGAAAAATGTACTCAAACCAAGAATTTTGATTTAATACAAAAGCTATTTAATTGTTCAGCATGTGCAAAGAAATTCTCTTCACTAATAGGACTTACAAACCATATGAAATGGAGGCATTCAATGAAAGATTTAGTATCGTGCAAAGATTGTGATAAAATTTTTCCAAAGCACTCTCATCTCAAAAAACACTCGTTGGAAGTTCACGGAAAAGAATTGTCAGAAGAATTGAAAGTTCTTTTACCTTTAGATTGCCAAATGTGTAAAAAAGAATTTCTTAATATAAATCAATTGAAACAACATATGCTAGTCCATGGGAAGAAAAAAATTTTCAACTGTGAAAATTGTCAACACGGTTTTAATAAACTGGAAAATTTTGAAAAACATAAAATTCTTTGTGAGCAGAAAACTAATGTGTGCGGAATATGTAATAAAAAATTTTCATCGGAAGAAATACTTTCATTACATATTGAAACAATGCATCCCAATAAAGATGATATTCCTTCTAAAAAAGAAGATTGTTTAATATTCGATAATGCTGCTCCTCAAACTAATGGTCACTCAGATAATCCGGTACCGAGTGAAATTTTATGTTCTGAAATAGGATTTGAAGATGGAGAACTCAATATCAAAGAAGAGCCGTTAGAGCAATTGCTGGAAGAAGCTGAAAGAGAAAATCAATTAATAAATGAAAATAGCCTAGGTGATTGCAATGATGACGATATTCCCAGTCTAGGTGATTATAGTGAGACAATAGAAAGTGATGCGTCTGAATACATTGGAGAAATAAAAATGAAGAGAAAACTCAATAGATTAAATAAACCTAATCGAAAATTCAAATACAAACTTATGAAGCAAAGTGAAAATGATCCACATTCTTTAAAATACCAATGTAGTCAGTGTCCTAGAAAACTTCCGACAAGTCTCGGCTTAAAAATACACATGGCTAAACATTATTCCGATCAAGGATTGTTATACAAGTGTGAAGATTGTGGCAAAGCTTTTTCCAAGTCAACAGAGTTGAAAAAGCACGAACGCACACATAACTCAATTAAGAATTTCAAATGTGATTCATGTGATAAGTCATTCCATAGACAAGATAATTTAGAAAGACACATGTGGCAACATATGGATAATAAACCTCATCAATGCGATGAATGTTCAAAGGGCTTTATGAGAATCGAACATCTAGCTAAACATAAAGTTGCAATACATTCCGGAAAGAAGAAAAATCCAAAGACTGCATTCTGTCCAATCTGTAATCGAGCTTACCCTTATAATATTACAGGATTTACGACTGAAAAATATTTAGAAACGCATATGCGCATGCACACCGGTGATAAAACATTTACTTGTAAAGTTTGTGATAAATCATTTAATACTAAATGGCATCTTAAAGAACATGGAAAATGGCATTCAGCTGAAAAACCATTCCTATGTTCAGAGTGCGGTCAAAGATTTATTCGTAATGATTATTTAATTACTCATATGCGTCGGCACAATGGCGAAAAACCATACAAATGTAGATTTTGTGGGAAAGGATTTCCGCGAGCAACTGATCTTACAGTTCATGAACGTTATCATACTGGAGAAAAAACACATTTATGTACAGTGTGTGGGAAAGGTTTTCAACGACAATATAATCTCACAGTTCATTTAAGAGTACATACGGGTGAAAAGCCTTACGTTTGTTCGTATTGTGGTAAAAAGTTTGCCCAAGGGAATGATCTTAAATCACACGTCCGGAGACATACAGGAGAACGATTTAATTGTGAAATATGCGGTGATGGATTTATACAGGGATATCATTTGACTCAACACAAACGCAGTATGCATGGTATACAATGTGTTTCACATATACGGCGTGTAGAGAAACATCCTCAGTCTAACGCACAAAACTTAAACATTGCAAAGCATCGAGTTCGTCCCGTTCAGCAGCAGATTGCTGCACATCTTGCTACAAATATTAGTAATCAATTACAGCAAACTACAAATGCATCCTCTCAAAATGTTAACGTACCTGCTGAAAATCAGACCTCCTTGACAAGTCAATTAAATTCTAGATGTATCGAAAATGAAACCATAAATATTCCACAGCATCATTCAGTTTCATTACAATCTCAGTTAGCTGCAGTCCAATCCGCAGCTGCCGAGGTTGATTTATCACAACGCACACATCCTATGCCAGCTCTAATGCCAATTGTGCCTCTTGCAATATTTTCGAATATACACAATCGAATTTAA
Protein Sequence
MQPLFNTCGEAREPRLNQMLMSSTQIQVAENDGLPCQICVHCTYQLSSAFTFKQMCERSDAKLRNFVSKTKSTTKMLPCQSSVQNLEAPVKQEGIALQQNANNEIIDFNTMFNHDMNAIKMERDNSESQSTKCDDDKKSIGLKNSLSEGPLNLINSIEKCTQTKNFDLIQKLFNCSACAKKFSSLIGLTNHMKWRHSMKDLVSCKDCDKIFPKHSHLKKHSLEVHGKELSEELKVLLPLDCQMCKKEFLNINQLKQHMLVHGKKKIFNCENCQHGFNKLENFEKHKILCEQKTNVCGICNKKFSSEEILSLHIETMHPNKDDIPSKKEDCLIFDNAAPQTNGHSDNPVPSEILCSEIGFEDGELNIKEEPLEQLLEEAERENQLINENSLGDCNDDDIPSLGDYSETIESDASEYIGEIKMKRKLNRLNKPNRKFKYKLMKQSENDPHSLKYQCSQCPRKLPTSLGLKIHMAKHYSDQGLLYKCEDCGKAFSKSTELKKHERTHNSIKNFKCDSCDKSFHRQDNLERHMWQHMDNKPHQCDECSKGFMRIEHLAKHKVAIHSGKKKNPKTAFCPICNRAYPYNITGFTTEKYLETHMRMHTGDKTFTCKVCDKSFNTKWHLKEHGKWHSAEKPFLCSECGQRFIRNDYLITHMRRHNGEKPYKCRFCGKGFPRATDLTVHERYHTGEKTHLCTVCGKGFQRQYNLTVHLRVHTGEKPYVCSYCGKKFAQGNDLKSHVRRHTGERFNCEICGDGFIQGYHLTQHKRSMHGIQCVSHIRRVEKHPQSNAQNLNIAKHRVRPVQQQIAAHLATNISNQLQQTTNASSQNVNVPAENQTSLTSQLNSRCIENETINIPQHHSVSLQSQLAAVQSAAAEVDLSQRTHPMPALMPIVPLAIFSNIHNRI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-