Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.021 1e+02 2.7 0.1 17 43 46 69 41 70 0.75

2 6 0.062 3e+02 1.2 0.3 19 26 77 84 72 93 0.86

3 6 1.7e-06 0.0085 15.8 0.8 14 39 100 122 92 129 0.83

4 6 0.012 57 3.6 1.3 19 29 133 143 123 149 0.82

5 6 2.1e-05 0.1 12.4 2.6 3 38 146 177 144 182 0.84

6 6 0.013 63 3.4 0.1 19 43 189 210 185 211 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.021	1e+02	2.7	0.1	17	43	46	69	41	70	0.75
2	6	0.062	3e+02	1.2	0.3	19	26	77	84	72	93	0.86
3	6	1.7e-06	0.0085	15.8	0.8	14	39	100	122	92	129	0.83
4	6	0.012	57	3.6	1.3	19	29	133	143	123	149	0.82
5	6	2.1e-05	0.1	12.4	2.6	3	38	146	177	144	182	0.84
6	6	0.013	63	3.4	0.1	19	43	189	210	185	211	0.77

Coding Sequence: ATGCTCAAGGTGGTGCAAGTGGAGCACCGACCGGCTATTGTCCGATTACCAGCTGAAGAAATATTCAGATTGCGACAATTGCACGCCCAGCATCAGTTACTTCTGCGACCCGGTGGACATCCTTTGTCCGATGTGTTTTCTTGTGTCAAATGTGAAAAAATGTTTTCTACGCCGCATGGACTGGAAGTCCATGCGAGACGATCGCACAATGGCAAACGACCGTTTGCCTGTGAGCTCTGCAATAAGACCTTTGGACATGAGATCAGCCTTAGCCAACATAGGGCTGTGCATAGCGTAGAAAAGGTCTTTGAGTGCAAGCAGTGTGGTAAAACGTTCAAAAGATCCAGTACGCTCTCAACTCATCTCCTGATACATTCTGATACTAGGCCATATCCTTGCCAATATTGTGGCAAAAGATTCCATCAAAAATCGGATATGAAAAAACATACATACATTCACACAGGTGAAAAACCTCACAAGTGTCAAGTTTGCGGAAAAGCTTTCAGTCAGAGCTCAAATTTGATTACCCATTCAAGAAAGCACACTGGATTTAAACCCTTCGCATGTGACCTTTGCGGAAGAGCTTTCCAACGAAAAGTTGACCTCCGTCGTCATAAAGAGACTCAACATACCGAGCTTCGACCTTTGGGTGCAGCCCTGCCGCCTGCCTGA
Protein Sequence: MLKVVQVEHRPAIVRLPAEEIFRLRQLHAQHQLLLRPGGHPLSDVFSCVKCEKMFSTPHGLEVHARRSHNGKRPFACELCNKTFGHEISLSQHRAVHSVEKVFECKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACDLCGRAFQRKVDLRRHKETQHTELRPLGAALPPA

Sequence clustering based on sequence similarity using MMseqs2