Stie000021.1
Basic Information
- Insect
- Stenopsyche tienmushanensis
- Gene Symbol
- lov
- Assembly
- GCA_008973525.1
- Location
- Contig155:390934-415443[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-19 1.7e-15 56.1 0.0 1 44 311 354 311 355 0.96
Sequence Information
- Coding Sequence
- ATGGCCGGGCCCGAAGAGCACTACAGCCTCCGCTGGAACAACCACCAGCACCACCTCCTGAGGGCCTTCGCCGCGCTGCTGAGGGCCGAGGCGCTCGTGGACGTGACGCTCGTTTGCGCCGAGGGCCGCGTCCGCGCCCACAAGGTGGTCCTCAGCGCGTGCTCGCCCTTCTTCCGGAGGATATTCTCCGAGAACCCCTGCAAGCATCCCGTCATAGTTCTCAAGGACTTTCACGGTTGGGAAGTGCAAGCGGTGATAGATTTTATGTACAGAGGTGAAATCAGTGTCGCGCAAGAACAGTTGAAGATGATCATCAAGGCGGGGGAGGCGCTCCAGGTGCGCGGGCTCGTCGAGCAGGACGGCGCCGCCAACGAGAGGGAGGGCGGCAGCTTCGGGGACGAGACGCCCTCGCCGGAGCCGACGCTGTCGTCGGACGGCGCCGACGAGATGGTCCCGGGGATGCCCTCGGCGGCGTCCCCGGCCTGCTGCTCGCCCCTGCCCAGACGGAAGCAGGCGCGCCCGCGGCGCCGCTCCGGCGAGGGCCCCCAGGACCTGTCGCTCGGGTCCCGGCGGGAGCCCCAGGCGCCGGCGCTCAAGGACGTCCGGCGGCCCCCGATGAAAGCCGAGGAGGAGCCGCGCTGCAGTCCGGAGCTCCCGCCGCCGAGGCTCCCGCCGCCGGAGCCGATGCCCTTCCCGCCGGCGCCCTCCGTCTCGGCGCTGGCCCTCACGCCGCCTCACATGTTCGGATTGGATTCGGGACTGGGACTTTTCCCGCCGGGGATGGACCCCGGGAAGTTATACAGTCCCCTAATGGAAATGCCTGACCCTCGAGCACCTCCCCACGATCCTCATCTGTTCTCCAGCGTCAAGAAAAAATGGCGCCCAAAGGGGCAGCACAGTGCACCCCGCGGAGGACCTCCTCGTTCCTGGACCAACGCAGAGCTCACAGAAGCACTCCAACATGTCTGGAACAAAAAGATGACGACCAGTCAAGCATCTAGGATATTCGGAATCCCGTACAATTCACTCTTGATGTACGTACGCGGAAAATACGGCAAGAGCCTGAAATTAGAACAACTCCGCAAGGACTGTATAGGAGGGCCTCTCGACATCCTCGGAATGGGTCCAGGTAACAACAACAACAATTCAACTCCAAAACACCACGTAAAAGACGAACAAAATATGAACGCTCTCAACCAAAGACCGGCGAGTTCAGAACCCGATTTAATGTCAAATCCGATGTTCAACCCGTTCACTCCAGGCTTTTATCCGGAATTTTCGCCAGGTTTTCCGATGCCGATAAACATGCTGCATCTCTTACCCCACGGCGATAAGACTCGAGACATCTATGGACAGAGCATGCCGTTAGCTCTCGACATGCTGACTAACAAAGAAGAGGACTGCAAGAGCGATCGCTCGAAAGAAAACTCCGCGGACGAAGATACGGACCACATGTTCAGGCCCCCGCCTCTCTCCAGGGACGACCGGAGGGAGATCATCCAGCAAAACGGCCAGGACTAG
- Protein Sequence
- MAGPEEHYSLRWNNHQHHLLRAFAALLRAEALVDVTLVCAEGRVRAHKVVLSACSPFFRRIFSENPCKHPVIVLKDFHGWEVQAVIDFMYRGEISVAQEQLKMIIKAGEALQVRGLVEQDGAANEREGGSFGDETPSPEPTLSSDGADEMVPGMPSAASPACCSPLPRRKQARPRRRSGEGPQDLSLGSRREPQAPALKDVRRPPMKAEEEPRCSPELPPPRLPPPEPMPFPPAPSVSALALTPPHMFGLDSGLGLFPPGMDPGKLYSPLMEMPDPRAPPHDPHLFSSVKKKWRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGGPLDILGMGPGNNNNNSTPKHHVKDEQNMNALNQRPASSEPDLMSNPMFNPFTPGFYPEFSPGFPMPINMLHLLPHGDKTRDIYGQSMPLALDMLTNKEEDCKSDRSKENSADEDTDHMFRPPPLSRDDRREIIQQNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00675060;
- 90% Identity
- iTF_01367070;
- 80% Identity
- iTF_01367070;