Scau005300.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- znf711
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010000545.1:10519-20527[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 4.6 2.7e+02 2.0 0.3 6 23 302 321 299 321 0.87 2 16 0.097 5.8 7.3 2.9 1 22 420 441 420 444 0.90 3 16 0.42 25 5.3 2.1 2 19 501 518 500 521 0.95 4 16 8.7e-05 0.0052 16.9 3.2 1 23 536 559 536 560 0.95 5 16 0.0078 0.46 10.7 0.6 1 22 564 585 564 588 0.90 6 16 0.0035 0.21 11.8 1.6 2 23 603 625 602 625 0.95 7 16 0.02 1.2 9.4 0.3 3 22 629 651 628 651 0.90 8 16 4.2 2.5e+02 2.2 0.6 2 23 665 686 665 686 0.86 9 16 0.0069 0.41 10.9 0.4 1 23 705 726 705 726 0.98 10 16 0.019 1.1 9.6 1.0 1 23 732 754 732 754 0.93 11 16 0.001 0.061 13.5 0.8 1 23 776 798 776 798 0.95 12 16 4.2 2.5e+02 2.2 0.9 2 23 804 827 803 827 0.89 13 16 0.00045 0.027 14.7 1.0 1 23 833 855 833 855 0.97 14 16 0.00013 0.0079 16.3 3.5 1 23 861 883 861 883 0.98 15 16 0.00051 0.031 14.5 2.5 1 21 889 909 889 910 0.95 16 16 1.1 65 4.0 0.9 1 23 920 946 920 946 0.88
Sequence Information
- Coding Sequence
- ATGATCGGCGACTATGAAGAAGACGACGCCCATTTTTGTCTGAAATGCCACAATACAATTATCGGATTGGATAATTATGTGAATCATCGTAAATCGGGCTGTTCGAAATCGGTGGTGGATTTAGCAAAATCACCGCTACCTAGCCAATTATTACCGCCAGACGaatcatttaatttgaaaGCGGATGATTTTTTCTCATCACTTGAACTACAAAGTAGTTCGAAAAAATTACCACCGCAATCGAGTAGTGGGAAAAATTTCGGTATTCTGACTCGCAGCAAGACCACAGCAGTGATTCaagcatcatcatcaacaacgaTTAAAGATCAAGAATTACCGCAATCGAAATCGGGCAAAAACGTCTGGATCGGCGGTCATCAACTCAAATTAGGCTATGGCGATAACCAATCAAAACTAATAAAAGCCGTTGATAATCTGGAACGGCGTAAAGAAGACCCACCTAAAATCGATGTATATGAAGATAGTGATGTAGATTCAGAagattatgattatgatgTGGATGAatatagtgatgatgataatgcaCCACCGCGGAATCATACCGGTGGTAAATGGAAGCCATCATCTCCCATAGATTGGAATGTACCATCGCCGAGTTATACCGGTGGTAAATGGAAGCCTTCGTCGCCGCCTATGTCGccgaaaaatttcgaagatCCCCAATCGTCGATTAGTGGAGGTAAATGGAGCCAATCGAAAACACCACCATCGACCCATACCAAAGGCAAATGGAAACCGGACGAAGATGAGACCACTACTCGTCTAAAACGACCATCCAAGCCCGATCCACCGCAAATGGAAGTTGCAAAGAAATTACCGAAAATCACCGATGACTCGCCATTTCGTAAATCAAGCGGTACAGTACAGTACTGGTGTCGGCCTTGTGACCGTCGTTTAGCCTCTAAAGTCGTCTATGAACGACATTTAAGATCCGAACTTCATTTCAAACGAACATTACACGATAAAGAACTGGACGATAATTTAGGATTAATTACAGAGAAGCgcaataaaaagaaattgatgGTGATTGTTGAAACGAAGAATCCGGATCCGATCAAAAAACGTAAACGTAaaaagatttttattaaatgtgAAGTTTGTAGAGCgaaagttaattgtaatttaattggGAAACATTTAATTTCGCATTATCATTGTCGAAAAGGTGATAATACAACACAAATAGCTAGAAATATGGTTTTGGACAATATTTGGGCTATTATCCTACAAAGCCCATTTCAATGTGGATTATGCAAATTCTACTTTAATCACCAAAAAGATTTTTTACAACACTGGTCATCGGAACTACACCAAAACAAAGATCGATCGAGAAAAGGCTATTTTTGGTGTCTATTTTGCGAATATAAAGCCTACAATAATGACGAAATGTATAATCATTTGATATCACAAGAGCACAATGAAGTGATTTCGGTGATTAATCGTTCAGTTCCTATcgttatcaaaaaattaaacccGATCAAATGTCGAGATTGTCACAAAGAATTCTTACAGAATTTCGCCCTAATTAAACATTGTCAATTAGTGAATcataaaagtgaaaattcaaatgatttcatcaacaatttcatttgttcaaaATGTAATCAAGTATTTCGCTCGAATATTTCCCTAAAACGCCACAAACAAAGTGTCCATCATGAAATTCTCTATATTTGTACAGTTTGCAATATCGATTTCAAGACAAATCAAGAGGCGAAAAATCACAGAAATTCAACAGatcacaaatataaaattttaagcAAACATCAAGTGATTGAGGCGAAAAAGTGTGATTATTGTGGtggaaaatttgcaaatttccaacaattcaaacaacaTCTGAAAGAACAACACCGGGAATTTTGCCCGAAGTGTATCCATTGCGGGCTAATTTTCGCCGTTGCTCAAGAACTCACCGTACATTTACGTACGAAATCCTGTGAATATTCAACCGATTTCCATATGGAAAATTCTTGTGATAAATGTCCATTCTCTTCGAATTCCACCAGCGAATTACTATTCCATCAAGTTTTACACAATGAGCCATTTTTGAGTTATCCACAAGATACAAATAAGAAACCAACACAAATGTATAAATGTCCTTTATGCGAAAAATTATATCCTAAATCATCATTACAAGGCCATCTTCGATTGCACACAAAAGAACGTCCATATATTTGTGCGATTTGTAAGAAGGGTTTTGTACGTAAAAATAATTGGCTGTTCCATTACAAGAATCACGGTAAGAGAAATATTAAGGAGTTGAAGAGGAATAATGAGAAGAAAATTGGCGGAGATCGTCCGTTTCTGTGTCAGACTTGCGGAGCTAGTTTCGAGAAAAAATCGATTCTGCAACAACATATGACGACTCACACCGGTAAATTGTGCAAATGTCCGAAAATCGGCTGTATTTTTTCAGCTAGAACAATGGGTGAATTGAAATTGCATTATCAAACACATTCCGATATTAAGAATTTTGCGTGTAATTTATGCGAATATCGAGGCAAAACCAAACAACAACTAAACAGACATATGACAATTCATGATGGCGTGAAGAAATTCAAGTGTGATCAATGCGAATTTTCGTCTAGAACTGTATCGCATTTGAAACGTCACATCCGGCTACACACCGGATCTAAGCCGTACAATTGCCCACATTGCAATTATAAATGTAACACAATGgAAAATCTACGTAAACATATTCTATTGACCGGAAAACACCAAGGCAAGTCGATTTATCAATGTAAATTCTGCGATAATCGCCAATTCGAGACGAATTTCGCTAAAGAACTGAAGGCCCATCTTATCACACAACATCCACAAATGTTCAATTCGACCAAAGCGACGAGCTATATAGCCGGCATTTACGATATCGAAGAGGATAATCTAGTCGGGGACCTATCCGAAGAGGAGCCGGAAAAaGCGAAGCCTAAAATTATCGTcgtccaacaacaacaatcactaGATCCGGTTGTTGGACCTTCCAATAAAGATACGAATGAAGATTGTAATTTGGATGAAATTTTCCCTATGTTTATTGTATCGAAAGATGAAGTCATTTCGGTGGATACGGAAGCTTGGAATTTGGTTGGTAGTTATGATGTTGAAGAATCGGGTGCTTTAGTTCCGTTCAATAGTGATAATGAAGCtttatttcaagaaatttga
- Protein Sequence
- MIGDYEEDDAHFCLKCHNTIIGLDNYVNHRKSGCSKSVVDLAKSPLPSQLLPPDESFNLKADDFFSSLELQSSSKKLPPQSSSGKNFGILTRSKTTAVIQASSSTTIKDQELPQSKSGKNVWIGGHQLKLGYGDNQSKLIKAVDNLERRKEDPPKIDVYEDSDVDSEDYDYDVDEYSDDDNAPPRNHTGGKWKPSSPIDWNVPSPSYTGGKWKPSSPPMSPKNFEDPQSSISGGKWSQSKTPPSTHTKGKWKPDEDETTTRLKRPSKPDPPQMEVAKKLPKITDDSPFRKSSGTVQYWCRPCDRRLASKVVYERHLRSELHFKRTLHDKELDDNLGLITEKRNKKKLMVIVETKNPDPIKKRKRKKIFIKCEVCRAKVNCNLIGKHLISHYHCRKGDNTTQIARNMVLDNIWAIILQSPFQCGLCKFYFNHQKDFLQHWSSELHQNKDRSRKGYFWCLFCEYKAYNNDEMYNHLISQEHNEVISVINRSVPIVIKKLNPIKCRDCHKEFLQNFALIKHCQLVNHKSENSNDFINNFICSKCNQVFRSNISLKRHKQSVHHEILYICTVCNIDFKTNQEAKNHRNSTDHKYKILSKHQVIEAKKCDYCGGKFANFQQFKQHLKEQHREFCPKCIHCGLIFAVAQELTVHLRTKSCEYSTDFHMENSCDKCPFSSNSTSELLFHQVLHNEPFLSYPQDTNKKPTQMYKCPLCEKLYPKSSLQGHLRLHTKERPYICAICKKGFVRKNNWLFHYKNHGKRNIKELKRNNEKKIGGDRPFLCQTCGASFEKKSILQQHMTTHTGKLCKCPKIGCIFSARTMGELKLHYQTHSDIKNFACNLCEYRGKTKQQLNRHMTIHDGVKKFKCDQCEFSSRTVSHLKRHIRLHTGSKPYNCPHCNYKCNTMENLRKHILLTGKHQGKSIYQCKFCDNRQFETNFAKELKAHLITQHPQMFNSTKATSYIAGIYDIEEDNLVGDLSEEEPEKAKPKIIVVQQQQSLDPVVGPSNKDTNEDCNLDEIFPMFIVSKDEVISVDTEAWNLVGSYDVEESGALVPFNSDNEALFQEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -