Scau004101.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- -
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010000360.1:5241-6655[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.29 17 5.8 0.3 3 23 111 129 109 129 0.91 2 11 0.00034 0.02 15.0 1.4 2 21 135 154 134 155 0.93 3 11 0.0001 0.0062 16.6 1.9 1 23 167 189 167 189 0.98 4 11 0.0028 0.17 12.1 2.6 1 20 235 254 235 255 0.96 5 11 0.13 7.6 6.9 0.2 2 23 259 279 258 279 0.94 6 11 0.013 0.76 10.1 0.5 3 23 286 307 284 307 0.93 7 11 0.014 0.83 9.9 6.9 1 23 312 334 312 334 0.95 8 11 1.7e-05 0.001 19.1 3.6 1 23 340 363 340 363 0.95 9 11 0.00034 0.02 15.0 3.3 1 23 369 391 369 391 0.96 10 11 1.9e-06 0.00011 22.1 0.9 1 23 397 420 397 420 0.98 11 11 6.2e-05 0.0037 17.4 2.3 2 23 429 450 428 450 0.96
Sequence Information
- Coding Sequence
- atggagaaaaaaaattgtaggttATGTTTGGGTACTGCTCCAATTTGTTTTTCGTTGTTGACTCCCgatatttcaaaaatgttAGAATCTCTAACATCAATTAAGgTGGTAGATGGTGATGAATTATCAACAGTGAGCTGTACAAAATGTTTATTAAACTTAAAATTGGCATATAGtatacaacaaaatatattaaaagttGATGAGCAATTGCGCAATAATCATCTGAACatcaaagaaataaaaaaagagaTTTGTGAAGTGATGATTGAAGAGAGAGATGAACTGGTCAAAACATCAGCAGAAACATTAgaaatttgtgatgatttctgtaaaatttgtggaatttctATCAAAAGTAATATGATGAATCATATACAAGAACATTTCCAATCTATACAAgaatgtaataattgtaataaaagcTTCAAAAATATCCACGAATACCGTCAACATTTGTTGAATtgtcaacaacaaaacgatgAAAAGAAAGACTCTTACACATGTGGAAAGTGTGGCAGCAAGTTTCGTTATGAATCATTATATAATTTACATATGAAAAATCACGAAAATGAGGATAATATTGCTAGTGataatgatgacgatgatgatgtcGACGATGAGGATGATGATCATGATCAAGTTGATGAGAAACTTTTGAACGGTCAATATTTTCGCGTTactataaatgataaaataagtTATCGTTGTAATGTTTGCTCGAGAATTTATAAATCACGTAAACAATTCGCCAAACATACACACGATCGTAAAAGATGTCCAATATGCGATGCGAACGTTACAGTGAGTAATTGGAAGAAGCATGTTAGCAATCATAGTTCTGGGCCACAAATATGTGAATTATGCGGTGCTACGTTACGAAGTCTTGAAAGTTTAAGAGGACATATGACACATACGCACAGTAAACAACGATATAAATGTGAAGAATGCAATTTAACGTTCAAAGtccattataattatgttaAACATTGTAAATCACATACCGGCGAAAAAGATCATATTTGTGAACAATGCGGTCGTGGTTTCATCACAAaacattatttaaacaaacatataaaattgaaacatctGAAATTACGTCCGcatatttgtgaattttgcaAAAGGGGATTTTCAAGCAAGAATGCCTTAAGTACACACCGACGACAACATACAAATGAAACACCGTATCGTTGTGAAGTGTGCGGTGAAGGTTTCCGACAAAATGTTTCATTGCGTACCCATCGCAAATCGAAACATAATATTGTCGAACCGAAAACTTGTGCATGTGAAATTTGTGGTAAAGAATTCAGTAGTCGACAGGCTATCCACAGTCATATGAGACTACATTAA
- Protein Sequence
- MEKKNCRLCLGTAPICFSLLTPDISKMLESLTSIKVVDGDELSTVSCTKCLLNLKLAYSIQQNILKVDEQLRNNHLNIKEIKKEICEVMIEERDELVKTSAETLEICDDFCKICGISIKSNMMNHIQEHFQSIQECNNCNKSFKNIHEYRQHLLNCQQQNDEKKDSYTCGKCGSKFRYESLYNLHMKNHENEDNIASDNDDDDDVDDEDDDHDQVDEKLLNGQYFRVTINDKISYRCNVCSRIYKSRKQFAKHTHDRKRCPICDANVTVSNWKKHVSNHSSGPQICELCGATLRSLESLRGHMTHTHSKQRYKCEECNLTFKVHYNYVKHCKSHTGEKDHICEQCGRGFITKHYLNKHIKLKHLKLRPHICEFCKRGFSSKNALSTHRRQHTNETPYRCEVCGEGFRQNVSLRTHRKSKHNIVEPKTCACEICGKEFSSRQAIHSHMRLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01022480;
- 90% Identity
- -
- 80% Identity
- -