Scau010030.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stenodera caucasica
Gene Symbol
zfh1
Assembly
GCA_037414795.1
Location
JAZBGZ010002015.1:1063-8460[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.0042 0.25 11.6 2.3 2 23 55 77 54 77 0.97
2 8 0.00028 0.017 15.3 1.1 1 23 118 140 118 140 0.95
3 8 7.4e-06 0.00044 20.3 0.6 2 23 147 168 146 168 0.97
4 8 1.4e-06 8.2e-05 22.6 5.9 1 23 177 199 177 199 0.99
5 8 1.1e-05 0.00067 19.7 0.9 1 21 205 225 205 226 0.95
6 8 3.5e-06 0.00021 21.3 1.9 1 23 888 910 888 910 0.95
7 8 0.00014 0.0083 16.2 9.4 1 23 916 938 916 938 0.98
8 8 0.0065 0.38 11.0 4.0 1 21 944 964 944 965 0.96

Sequence Information

Coding Sequence
ATGGTGGCGCGTAGTGAAAGCATGTTCGGGTGTTACGACAGTTACTCCTACAGGTTATGGAGTCTGGCGAATGTCTGGAACACCTGCCAACTTCCTCCATTAACAAATGGTGTTGGTAAAGATGGTGatgaattaaattcgaataataatgatttttatatcaaatgtCCACAATGTCAAAAAGGATGTCAAAGTTTTCAATCGTTAAAAGAACATATGGAAACAACACATACTgatattataacaacaacaacccctGAAAGTGTATcatcattaacaacaacaacatcaacaacaaataatggtAGTGTATCACCAACCCCTAGTTTGATTGGTGGTAATGGTGGATCTTTTGCTTGTCAACAATGTACGTCAACGTTTACAACAAAAgatcaattagaaaaacatgaaCTTTTACATTCTCCAAATGCACAAGTGTCGTgtaaaatttgcaataaaacaTTTGCTAATGTTTACCGTCTACAACGACATATGATTAGTCATGATGAAAGTGCTGtattaagaaaattcaaatgtacAGAATGTGATAAAGCATTCAAATTCAAACATCACCTTAAAgaGCATATACGAATTCATAGTGGTGAGAAACCATTTGAATGTCCAAATTGTGGTAAAAGATTCTCACATTCAGGTTCCTATTCTAGTCATATGAcatcaaaaaaatgtttagTTATGAATTTAAAATTGGGCCGTACACGTAATAATGGACCAACAACATTATtagatacaaataaaaatacaaatcatcaaaatcgTAATATGAAACGTTCAAATATAAGtccattaaataataatttaacaacaacaacaacaacaaataataataataataataattcaaattatttaccaatattaCCAAAATATACAGAAGCTGCAGCTGCTGCATTTTTACAATCATCATTAACTgcaaataatacaacaataccACCATTTTATTTAGCACCAACTACTAGTTTATTAAAtccaaatcatcatcatcatcatcatcatcaacatcattcaATAACACCATATACAATACCAAATTTAGGACAtatatttgaacaattacaacaaaatccaTTAAGGCCACCATCTatattagaaacaaatgataattcagatgattataataaatcaattaataataataataataataataatgataataataatatagaagaAACTATAAAAACTGAGAATAATTCATTAACTAAATCGAATTCTTCAAGTTGTGGTGATTTAATTATGGATTGTGGtgatgaaacaacaacagcaacaacaacaactactacaACAACTCAAGATCAagaagaaacaacaataaaaattgaaaaaatggatgatggaacagcaacaacaacaacaacaacaacaacaacaaatgatttaGAAGCGGTAAAACGAATTTTGGAGACTGTAAATGCTGTTGTTACGAAACAATTTTTACAGGctaatatgaataaaataacatcAGAATCATCATCAAGTGATTGTCATAGTAATTCATCTATACATTCcccaaaattagaaaatgattGTGATTTATCTAATGATATAAAAAGTGAAGGTTTAGCTGCAAAATTAGAAGATGCAATAACTACAAAATCTGAagaacataataataataataatggtaatttgAGTGGTAATGAAGATCaagataaaacaaatgatgatgatgattgtgaaTCAATCACAACAACAGATCATGTATCAGAAGATGGTCGTAAAGTTCGTGTACGATCATTAATATCtgatgaacaattgaaaattttaaaagataattatcaaataaatccaCGTCCGAAACGTgaagatttagaaaaaattgccGAAACTATTGGTTTCCCGGTACGTGTTGTTCAAGTATGGTTTCAAAATACACGTGCTAGAGACCGTCGTGAAGGTCGTTTAATACAAGTCCCATATAATCCACcaataccaccaccaccaccacctccgATGCGTTATCCATTGGTGCCTTCAACTAAAttcccaacaacaacagcaacaacaacaacaacaacaacattacatAATTATGTATTGGAACAGCCTTTAGATTTATCAACGAAGAAATCGTTATCGAATGAATCATCACCAATTAGTTCACCATTATCACAAAATcatcatgataataataatattgatgaagtTGTAAATTTAAGTCGGAAATCATCTAGAAGTCCAACACCATATTTATCATATACGAATCCATTtcaaaattgtgatttaaCAAGACAAAGTCCATCaccaattgattataataatagtagttgTAATAGTAGTCGTTTAGCACAAATATTAGCACAACCGACTATACAACATAAATTACCAATATTACCAACATCacatataaatttaatacCAATGGAtgaattaatacaattaagTACAACAGATTTACCAACtttatcacaattaataaCGAATCGTTTAAATTGTTTAAGtccaaattcgaaaaaacGTATTTGGAATGAAAGTGctgaattattaaatgaaacattacatgatgatgatgataataatattatcattaacaataataacaataataataataatagtaaacgtaataaaatttcacaatttgcATTAAAAAGTTTAGGTAGTCCGGTATTAGGTAATCAAGATCAAGATATTGAAGGACAATATAGTTGTGATCAATGTGATAAATCATTTTCGAAACAAAGCTCGCTGGCGAGACACAAATATGAACATTCTGGACAACGGCCACATAAATGCGATGAATGTCCAAAAGCCTTCAAACATAAGCATCATTTAACTGAACATAAACGTTTACATAGCGGTGAGAAACCATTTCAATGTTTAAAATGTTTAAAACGATTCTCACATTCTGGTTCATATAGTCAACATATGAATCATCGTTATTCTTATTGTAAACCATAtagagaataa
Protein Sequence
MVARSESMFGCYDSYSYRLWSLANVWNTCQLPPLTNGVGKDGDELNSNNNDFYIKCPQCQKGCQSFQSLKEHMETTHTDIITTTTPESVSSLTTTTSTTNNGSVSPTPSLIGGNGGSFACQQCTSTFTTKDQLEKHELLHSPNAQVSCKICNKTFANVYRLQRHMISHDESAVLRKFKCTECDKAFKFKHHLKEHIRIHSGEKPFECPNCGKRFSHSGSYSSHMTSKKCLVMNLKLGRTRNNGPTTLLDTNKNTNHQNRNMKRSNISPLNNNLTTTTTTNNNNNNNSNYLPILPKYTEAAAAAFLQSSLTANNTTIPPFYLAPTTSLLNPNHHHHHHHQHHSITPYTIPNLGHIFEQLQQNPLRPPSILETNDNSDDYNKSINNNNNNNNDNNNIEETIKTENNSLTKSNSSSCGDLIMDCGDETTTATTTTTTTTQDQEETTIKIEKMDDGTATTTTTTTTTNDLEAVKRILETVNAVVTKQFLQANMNKITSESSSSDCHSNSSIHSPKLENDCDLSNDIKSEGLAAKLEDAITTKSEEHNNNNNGNLSGNEDQDKTNDDDDCESITTTDHVSEDGRKVRVRSLISDEQLKILKDNYQINPRPKREDLEKIAETIGFPVRVVQVWFQNTRARDRREGRLIQVPYNPPIPPPPPPPMRYPLVPSTKFPTTTATTTTTTTLHNYVLEQPLDLSTKKSLSNESSPISSPLSQNHHDNNNIDEVVNLSRKSSRSPTPYLSYTNPFQNCDLTRQSPSPIDYNNSSCNSSRLAQILAQPTIQHKLPILPTSHINLIPMDELIQLSTTDLPTLSQLITNRLNCLSPNSKKRIWNESAELLNETLHDDDDNNIIINNNNNNNNNSKRNKISQFALKSLGSPVLGNQDQDIEGQYSCDQCDKSFSKQSSLARHKYEHSGQRPHKCDECPKAFKHKHHLTEHKRLHSGEKPFQCLKCLKRFSHSGSYSQHMNHRYSYCKPYRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01366226;
90% Identity
iTF_01366226;
80% Identity
iTF_01366226;