Scau004390.2
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- topi
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010000401.1:32450-34826[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0071 0.42 10.9 1.9 2 21 96 115 95 116 0.94 2 13 1.5e-05 0.00087 19.3 1.5 1 23 143 165 143 165 0.97 3 13 0.0021 0.13 12.5 1.1 3 23 173 193 172 193 0.96 4 13 0.0017 0.1 12.8 2.8 2 23 256 277 255 277 0.97 5 13 0.6 35 4.8 0.0 1 19 283 301 283 304 0.81 6 13 0.0015 0.089 13.0 3.2 2 22 320 340 319 343 0.88 7 13 0.0042 0.25 11.6 0.6 1 23 461 484 461 484 0.94 8 13 0.13 7.6 6.9 0.2 1 23 488 510 488 510 0.97 9 13 2.7e-07 1.6e-05 24.8 2.5 1 23 516 538 516 538 0.98 10 13 0.017 1 9.7 0.2 1 23 544 569 544 569 0.96 11 13 0.025 1.5 9.2 2.7 1 23 575 597 575 597 0.86 12 13 0.00013 0.0078 16.3 0.5 3 23 605 625 603 625 0.97 13 13 0.011 0.66 10.3 3.5 1 23 631 654 631 654 0.96
Sequence Information
- Coding Sequence
- atggttaataatgataataaacaacttTCAGTGATTGATATTCATTACATTTCGGACGGTGATTATAGTTATTCAACACAATATGGTATTGATTCATTAACACaacaattaatatcgaaacaacaaaatttcaataataatttgaatttcgaattaaaatctgaattgaatttgagatATATTGATGACGATTTGGgtaatgatgatggtaaaattaagattataaaattggaaaatttcaatgattttgattataaattgaatataaatgtaCCAATAATGATACGTTGTCAAAATTGTGAAACAAATTATCCAAccaaatatcaatatcaacgACATCAATGTGAATTCAATGCTGATAAAGTTGTTTTAAAGCCAGATGCCGATCTAACAAATCTCGATGATAATAAacgaattaaaatcaaatatgattgtaatgtttgtaataaacaatttgttagtaaaaataatttggatcGACATCGATCATCGCATGAAAACCCGCAGAATAATCTTTGTGAATATTGTAATAAGAAATTTGTCACCGAGAACCGTTTACGTATTCATAAAGAGAATCATTGTAAAAAAGCtggtgatttattgaaattttatcgtaGTGATGTTATTGTATGGAAATGTTGTAAATGCTATCAAGTCTTCTCATCTAATATAATTGCAAATTACCATTATGAATCCTgtcatgaaaatttcgataatacaaaaacaacgaaacaAGTTGAAAAGATTTCAACCGAAATTTTACTACAATGTGAATTCTGTAATCGCACTTATGCAGataaacatattttattgaaacatcaAAAAACACATTGTACTGGTAGAAATTATGAATGTGTGATTTGCAATGAAATATTCGATTCCTACATCACAGCATCACAACATTGGTTGAAAAAATGTTCAGAACGAACTAATGTGTTTTATTTACCAAAATTGTTATATTGTCAATATTGTGATCGTACATTCAAATCACACGAATCACTTTATATacataaaattaaaaagaagCATTACACGCAAAAACTTCATTTGAATAATGGTGAAAATCATacgaattcaacaaaacaaattaaaaatgaaaatacaattaataaattaattgaagatgtTTTAATAGCTTTAGAGATACCAGTAAATGAAAAAAACtctgataacaataataataataataataataataataataatattgagttTGATAAAGATGATGTTCCACTAGTTGAAATTAAAAGTGAACCACAAGAAGATAGTGTAACAATGGAGGAAAATACTAATGAAAAAAAGAAACGTGGTCGTAAACGAAAactaacaaaacaacaatcattCAAGAACCAAACAAATGATTTAGAAGATGGTTTTGTATATCAATGTGAACGttgtgtgaaaattttcacTGGTGTTACCGATTTAGAGAAACATCATGAAGAAGAACATGATGCCACTTTTAGTTGTGATGAATGCTCACagGTATTGCATAGTGCTTTAGCCCTTTTAATACATAGTCGTGTCCATAAAGGCTTAAAACCATACGTTTGTGAAACTTGTGGTAAAAGTTATTCGCAAACTTCACATTTATGGCAACATATGCGTTTTCATCAAgGAATTAAGCCGTTTGCGTGTCCACATGAGGGTTGTGAAGCTCGATATACTATACGACCGGATTTAAAGGATCACATTCGTAAAGTTCATACAAGAGAACGTCCATTTAAATGTAATGTTTGTGGTAAATGTTTTTTGACTGGCTCggtttattatcaacatcgTTTAATTCATACAGAAGACCGACGATATGGATgcgatATGTGTGAAAGGCGTTTTTTTCGAGCGGATGCTTTGAATAATCATAAAAGGATCCATACAAATGAACGTCCATATCCATGTTTTGTTTGTGGACGATTATTTCGACAGAAAGGTGATCGTAATAAACATTGTCGTACACAACATCCTGATGCTATAActacttaa
- Protein Sequence
- MVNNDNKQLSVIDIHYISDGDYSYSTQYGIDSLTQQLISKQQNFNNNLNFELKSELNLRYIDDDLGNDDGKIKIIKLENFNDFDYKLNINVPIMIRCQNCETNYPTKYQYQRHQCEFNADKVVLKPDADLTNLDDNKRIKIKYDCNVCNKQFVSKNNLDRHRSSHENPQNNLCEYCNKKFVTENRLRIHKENHCKKAGDLLKFYRSDVIVWKCCKCYQVFSSNIIANYHYESCHENFDNTKTTKQVEKISTEILLQCEFCNRTYADKHILLKHQKTHCTGRNYECVICNEIFDSYITASQHWLKKCSERTNVFYLPKLLYCQYCDRTFKSHESLYIHKIKKKHYTQKLHLNNGENHTNSTKQIKNENTINKLIEDVLIALEIPVNEKNSDNNNNNNNNNNNNIEFDKDDVPLVEIKSEPQEDSVTMEENTNEKKKRGRKRKLTKQQSFKNQTNDLEDGFVYQCERCVKIFTGVTDLEKHHEEEHDATFSCDECSQVLHSALALLIHSRVHKGLKPYVCETCGKSYSQTSHLWQHMRFHQGIKPFACPHEGCEARYTIRPDLKDHIRKVHTRERPFKCNVCGKCFLTGSVYYQHRLIHTEDRRYGCDMCERRFFRADALNNHKRIHTNERPYPCFVCGRLFRQKGDRNKHCRTQHPDAITT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01566514;
- 90% Identity
- -
- 80% Identity
- -