Scau002580.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- -
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010000172.1:49911-58719[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0052 0.31 11.3 1.1 5 23 4 23 3 23 0.95 2 14 0.0073 0.43 10.8 0.1 2 21 44 63 43 64 0.94 3 14 0.2 12 6.3 1.0 1 21 72 92 72 93 0.93 4 14 0.0037 0.22 11.8 5.1 1 21 102 122 102 123 0.95 5 14 0.00012 0.0069 16.5 1.1 1 21 158 178 158 179 0.95 6 14 0.0002 0.012 15.7 4.5 1 20 196 215 196 217 0.95 7 14 0.45 26 5.2 0.4 1 12 225 236 225 240 0.85 8 14 2.3e-07 1.4e-05 25.0 0.7 1 21 241 261 241 262 0.97 9 14 9.7e-05 0.0057 16.7 2.0 1 20 281 300 281 302 0.95 10 14 0.88 52 4.3 0.0 3 17 312 328 310 329 0.91 11 14 1e-05 0.00059 19.8 1.8 3 23 342 363 341 363 0.93 12 14 0.0023 0.14 12.4 0.6 1 21 372 392 372 393 0.95 13 14 0.00014 0.0085 16.2 6.5 1 21 414 434 414 435 0.96 14 14 3.5e-06 0.00021 21.3 2.7 1 23 443 466 443 466 0.97
Sequence Information
- Coding Sequence
- ATGATAAGAACGTGTCAATATTCATCGAAAAGTCGTTCGAACTGGTATCGACATATGCGACGAATCCATTATTGTCTTGATGATGTTTATCTCAAAATGATGATCAATGATTGTGGAACAGATCGCATCGTTTGTCCCGATTGTCAAAGACCATATCAACGGATCACGTCATTGTATAATCATCGAAGATATGAGTGCGGCAAAGAGAAATCGTTCATTTGTCAATTTTGTAATCGAGCTTATTGGCATAAACAGCCCTTACAAAAACATCTTCTGAAATATTATCTGGAACATAATGGAACGTATTTTTGTACGAAATGCtttaaaaaatacaaacataAAGGCAATATTCGGCGCCATTTAAAATATGAATGCGGCAAAGAGGCAATGTTCGAATGCAATATGTGTTCATTCCGTTATTATTGCCGAAGTGGTAGACCAAGGAAATATTTTATGGACGCTAATGGTCGTTATCCTTGCGTTAAATGTGGCTCATCTTACAAACAAAAGACGCATTTAATCAGACATCTGAATTTCGAATGTGGCGTTGAGCcgaaattcgtttgtttttgtggtACTGCAGTCTTCAATTGTCATCGTTGTAAACGGAAGTATACACGAAAACAGAATCTCAATCGGCATATCTTCTATGAATGTGGCAAACAACCACTATTTCAATGCCCTTTATGTCCGAGGAAATGTGTTAATGATGGAATGTTGTATCAATGTCCTCAATGTGATAAAAGGTACAGATCCAGTGGTTCTCTAAGGCGGCACATACGCTATGCTTGCGGACGCAGAGGACCCCCTTTGACTGGCTATTATGTttataaaaacgaatttatttgTCAACGTTGCCATAAACGGTACAAAAATCTGAGCTCATTACGTCGTCATCTAGTTTATGAGTGTGATAAGCCGAAAACTGTAAATTGTCCGATTATCGGTTGTGGATATATGGCGAAAACCAAAGATCAATTGCGTAGTAGTATTTTGAAACAAGTGAAATTCGTCAACAACATGTGCCCAATTTGCTCGAAAATGTTTAAACGTAAAGATCACGTCCAACGTCATTATCTTGAATTGCATATATTCAATCAAGAGAATATGGGCTATCCTTGCGTTTATTgcgataaattatttaaaagaaaatacaTTTTAGATAATCATATGAAGAATTGCATTGGACAACATAAATGTCGTCTATGTTTGGTAGGCTATCATCAAGAACATCAAAGATATTACTGTGAACATTGCAGCAAAAGCTATAAACACAAACGGCATTTATCTAGCCACATCCGATATGAATGCGGTAAACAACCAGGTTTCGAATGTTCTGTTTGTAAAaagaaattctatcaaaaatataCGTTAAATGCACATTTACGACAGACGCATTCACGATTCTGA
- Protein Sequence
- MIRTCQYSSKSRSNWYRHMRRIHYCLDDVYLKMMINDCGTDRIVCPDCQRPYQRITSLYNHRRYECGKEKSFICQFCNRAYWHKQPLQKHLLKYYLEHNGTYFCTKCFKKYKHKGNIRRHLKYECGKEAMFECNMCSFRYYCRSGRPRKYFMDANGRYPCVKCGSSYKQKTHLIRHLNFECGVEPKFVCFCGTAVFNCHRCKRKYTRKQNLNRHIFYECGKQPLFQCPLCPRKCVNDGMLYQCPQCDKRYRSSGSLRRHIRYACGRRGPPLTGYYVYKNEFICQRCHKRYKNLSSLRRHLVYECDKPKTVNCPIIGCGYMAKTKDQLRSSILKQVKFVNNMCPICSKMFKRKDHVQRHYLELHIFNQENMGYPCVYCDKLFKRKYILDNHMKNCIGQHKCRLCLVGYHQEHQRYYCEHCSKSYKHKRHLSSHIRYECGKQPGFECSVCKKKFYQKYTLNAHLRQTHSRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -