Scau001677.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- -
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010000087.1:39915-41354[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00015 0.0087 16.2 1.7 1 23 33 55 33 55 0.98 2 10 0.0018 0.11 12.7 1.0 5 23 105 124 102 124 0.87 3 10 2.2e-05 0.0013 18.8 2.5 1 23 142 165 142 165 0.96 4 10 3.5e-06 0.00021 21.3 1.1 1 23 202 224 202 224 0.98 5 10 1.2e-05 0.00069 19.6 5.8 1 23 230 252 230 253 0.95 6 10 0.00027 0.016 15.4 3.1 1 23 259 281 259 281 0.98 7 10 2.9e-06 0.00017 21.6 2.2 1 23 287 309 287 309 0.94 8 10 8.2e-06 0.00049 20.1 2.4 1 19 315 333 315 337 0.96 9 10 0.00011 0.0064 16.6 1.7 1 23 343 365 343 365 0.99 10 10 2.9e-05 0.0017 18.4 0.3 2 23 375 396 374 396 0.97
Sequence Information
- Coding Sequence
- atgataacaaaaattatattaaaATTATCGACAACATTGGATGAGAGTTCAatcgatgatgatttattatcattcaacCGAAATTCACCGACTACATATAAATGTGAATATTGTGAAACAATATTcgataaacaaacgaaattagACAATCATATCAAATATCATAAATCAATACGTAAAATTAAAAGTaaaccaattataaaaaaattgaatgatacacaatcaaacgaaattgatgatgatgataataataaaatagaatcaaCTGAAGAATTCAATAGATTTGgcaatttaacaacaaaaatgtgTATTAAATGTAATATTGTATTTCGAACGaaaacattattaaaaaagcatatttatgataaacataatattaaattgaaacgatCACGACGTAAAAAATCGGAAATAACACCAAAATTCTTCTGTGATCTATGTGAAAAAGGATTTACACGAAAATCAGATATGGAGAAACATAAAAAGATGAAacattcaaataatgaaaatctgATAACATCTAGTAATTGTATAacgaaatcgaaaaattgtgaaattttgaaacgtTGTAAAATTACCGATTCTGAAGAtggtaaaatttattataaatgcgATTTATGTCCACGTATATTCAAACAATCATACAATATGATCCGTCATCGTACAATTCATACCGGTATTCGTTCATATTGTTGTCATATTTGTGGTAAAAGTTTTCGTATGTCGAATGGTCTAAGTCGCCACATTAACGAACATCATTTAggtataaaaaaatataaatgtgaTTTATGTTCGAAACGGTTTTGTTCGCGTGCCACATTCGATGaacatttaaatattcatacaGGTAATCGTCCGTATGTTTGTGATATTTGCGGTAAAACATTTCGACAAAAAGGCTCATTACATATTCATAAAACATTCCATACAAATATTTATCGTTTTAAATGTGATATATGCGATAAGAAGTTTCGTAGAAATCAAGAATTGAAACATCATAGTTGGATACATAGCGGCCATAAACCGTATAAATGTGGCAAATGTAATACAGGATTTCGTTGGAGGAATGATTTGAAGCGACATCAGAAGATTCATGAGAGATCGTCAATTGTTGAGAATATTGTATGTCGTGTGTGCGGCTCGAATTTCACTCAAGAACGTTATTTGAAAGCCCACATGAAAATTCATCCGAAAATTGACGAATTCAAACAGGAAATTAATACACCAAAGAATGAGTGa
- Protein Sequence
- MITKIILKLSTTLDESSIDDDLLSFNRNSPTTYKCEYCETIFDKQTKLDNHIKYHKSIRKIKSKPIIKKLNDTQSNEIDDDDNNKIESTEEFNRFGNLTTKMCIKCNIVFRTKTLLKKHIYDKHNIKLKRSRRKKSEITPKFFCDLCEKGFTRKSDMEKHKKMKHSNNENLITSSNCITKSKNCEILKRCKITDSEDGKIYYKCDLCPRIFKQSYNMIRHRTIHTGIRSYCCHICGKSFRMSNGLSRHINEHHLGIKKYKCDLCSKRFCSRATFDEHLNIHTGNRPYVCDICGKTFRQKGSLHIHKTFHTNIYRFKCDICDKKFRRNQELKHHSWIHSGHKPYKCGKCNTGFRWRNDLKRHQKIHERSSIVENIVCRVCGSNFTQERYLKAHMKIHPKIDEFKQEINTPKNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01566462;
- 90% Identity
- -
- 80% Identity
- -