Basic Information

Insect: Stenodera caucasica
Gene Symbol: -
Assembly: GCA_037414795.1
Location: JAZBGZ010000136.1:51767-54143[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.6 1.6e+02 2.8 0.7 6 20 10 24 4 26 0.85

2 15 0.0021 0.13 12.5 0.6 2 21 32 51 31 52 0.94

3 15 0.98 58 4.1 0.6 1 11 127 137 127 147 0.85

4 15 0.05 3 8.2 2.0 2 20 285 303 284 305 0.94

5 15 0.00083 0.049 13.8 3.1 1 23 309 331 309 331 0.98

6 15 0.00013 0.0079 16.3 0.8 3 23 357 377 355 377 0.97

7 15 0.23 14 6.1 0.6 1 14 408 421 408 429 0.82

8 15 6.1e-05 0.0036 17.4 1.7 1 23 435 457 435 457 0.97

9 15 0.0012 0.07 13.3 1.7 1 20 463 482 463 484 0.92

10 15 7.7e-05 0.0046 17.0 1.4 1 23 488 510 488 510 0.97

11 15 2.4e-06 0.00014 21.8 2.8 1 23 516 538 516 538 0.98

12 15 0.00039 0.023 14.8 7.0 1 23 544 566 544 566 0.99

13 15 1.3e-06 7.5e-05 22.7 0.4 1 23 572 594 572 594 0.98

14 15 1.1e-05 0.00065 19.7 0.2 1 23 598 620 598 620 0.98

15 15 0.00044 0.026 14.7 0.1 1 23 628 651 628 651 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.6	1.6e+02	2.8	0.7	6	20	10	24	4	26	0.85
2	15	0.0021	0.13	12.5	0.6	2	21	32	51	31	52	0.94
3	15	0.98	58	4.1	0.6	1	11	127	137	127	147	0.85
4	15	0.05	3	8.2	2.0	2	20	285	303	284	305	0.94
5	15	0.00083	0.049	13.8	3.1	1	23	309	331	309	331	0.98
6	15	0.00013	0.0079	16.3	0.8	3	23	357	377	355	377	0.97
7	15	0.23	14	6.1	0.6	1	14	408	421	408	429	0.82
8	15	6.1e-05	0.0036	17.4	1.7	1	23	435	457	435	457	0.97
9	15	0.0012	0.07	13.3	1.7	1	20	463	482	463	484	0.92
10	15	7.7e-05	0.0046	17.0	1.4	1	23	488	510	488	510	0.97
11	15	2.4e-06	0.00014	21.8	2.8	1	23	516	538	516	538	0.98
12	15	0.00039	0.023	14.8	7.0	1	23	544	566	544	566	0.99
13	15	1.3e-06	7.5e-05	22.7	0.4	1	23	572	594	572	594	0.98
14	15	1.1e-05	0.00065	19.7	0.2	1	23	598	620	598	620	0.98
15	15	0.00044	0.026	14.7	0.1	1	23	628	651	628	651	0.97

Sequence Information

Coding Sequence: atggCTACCTTAATCTGCCCTTTCTGTTGTCACGAAGAATTCGAAACATTTATAGAATTAAAAACACATCTTTTACAAATCCTAGAAAATTTGCAATGTAAAAATTGTAGTAATTCTTTTACAAATTCCACTGATTTCATACaacatttaaatgataatgattgtcAACGGAATAATACTGAATTAGTtgatatgaaaattaaaactGTACTCACCTTCGAAGGtcatcaaattgatgatgatcaattggaaaatgatAGTAAAAATAAGGATAATATAGAagtcaaattatttgaaaattcactcTCAACAAATGGTCaagataataatgaagaaatcaCTAATGAGAATTTAggcgaaattgaaaatttgggcgattattattgtcaaatgTGTGGTATACATTTTAATGAGATTGAAGAACATCTGAGAGATTTCCATGAAGGACAGGAAATTATAGTGGAAGATGACAACGACAATGATGAAGCTTCAATGGAGGTTGACGAGCCgtctacaacaaaaacaatttatttactAGATAATTCCCAATTAAATTTCGACTACACCAAAAATGACGAACTTAAAGTGGAAGAAAAcgaagaaaatttcattggCGACCAACAAAACGAACAAGCTGAAATAATCAACGAACAAAACATTAAAGATAAAGACGGCCGTTTATATACACGGAAATTTGTAAAGATCGATAAATTCTGGTTGGAcaacacaataaataatgaatataaagagccaattatacaaaaatacattattgatgatggtgatgttaaaaaaataacagatgATGATTAcgataaaatcgatgataaatcaacaatcattgaaatcaatcaatgtcccgattgtaatttattgtttacgGTATTcgagaattataaaaaacataaatgtaatgatgaaaaattcaaatgcgACCATTGTAATGTGATTTTCAACGATTATGATGGATTACATGATCATTTGAAACAACACGACCATAATGATagcgataatgataatgataatgataatgccAATGATGACGTAAATAAGAAGAAAACAATGAATTGTGAGATTTGTAATACAATATTTCCTACAACGAAATCATTACGTTTACATCGACGTATGCACGAACCCGTTAAAGGACGTGAAATTGAAGCACCAGTCAAATACGACATTAACGACATAACTAAAGACGATGATCAACAATTAAGACCGATGTTTTTATGTAAAATCTGTAATAAAAGTTACGATAAACAATACGAAGAGGTCCACAAGGAATCCCACAATAATACTGACGGTTATAATTGTGAGACTTGCAATCGGAAATTCTTCAGTCAAACCAACTTGGAGATGCATCTAAAAGCGCATtcgaataacaaaaaattcgcTTGTTCCTACTGTAAAAAACCGTTCGTAACGTATGATGCGTTAAAAGAACATTCTTGTAAAGAGCGAACTTATGCTTGTCAATATTGCGGACGGCGCTTTATCCGTCCGCATGAAAAAGTGAAACATGAACGGATCCATACGGGAGAGAAACCGCACGTTTGTGAGATTTGCGGTAAAGCATTCCGTGTGAATTATTGTCTAACATTACATTTACGTACACATTCCGGTGCTAGGCCTTATCAGTGTTTTACATGCGGTAAACGTTTCAAATCGCACAGtgtttataatcatcatttattaacGCATTCAGATCAACGTAAATATAAATGTCCTTATTGTCCGAAAGCGTTCAAAACTAGTGTCCAATTGGCCGGACATAAGAACAGTCATACAAAACCGTTCACGTGCACCGAATGTAATCGACCCTTTGCTTCATTGTATGCTGTTCGGGCCCATATGGAGACCCATAAACgtgataataatttacgtTATGAATGTTGGATGTGTGGTGCTTTATATTCAAGGGCTTTCGCTTTAAGAGATCATatgaaacaacaacatcaagaTTGTAATTCGACTAATAATAGTGATCattgtgataaaaataaagtttTGAATGTTGAAGAGGAAATTGATGCCGCCAACTCGATTCTAGTTAAAGAAGATGATATTATTTTGGGACTAGAAGGGACcagtattgaaattatcgaaaataattgtagataG
Protein Sequence: MATLICPFCCHEEFETFIELKTHLLQILENLQCKNCSNSFTNSTDFIQHLNDNDCQRNNTELVDMKIKTVLTFEGHQIDDDQLENDSKNKDNIEVKLFENSLSTNGQDNNEEITNENLGEIENLGDYYCQMCGIHFNEIEEHLRDFHEGQEIIVEDDNDNDEASMEVDEPSTTKTIYLLDNSQLNFDYTKNDELKVEENEENFIGDQQNEQAEIINEQNIKDKDGRLYTRKFVKIDKFWLDNTINNEYKEPIIQKYIIDDGDVKKITDDDYDKIDDKSTIIEINQCPDCNLLFTVFENYKKHKCNDEKFKCDHCNVIFNDYDGLHDHLKQHDHNDSDNDNDNDNANDDVNKKKTMNCEICNTIFPTTKSLRLHRRMHEPVKGREIEAPVKYDINDITKDDDQQLRPMFLCKICNKSYDKQYEEVHKESHNNTDGYNCETCNRKFFSQTNLEMHLKAHSNNKKFACSYCKKPFVTYDALKEHSCKERTYACQYCGRRFIRPHEKVKHERIHTGEKPHVCEICGKAFRVNYCLTLHLRTHSGARPYQCFTCGKRFKSHSVYNHHLLTHSDQRKYKCPYCPKAFKTSVQLAGHKNSHTKPFTCTECNRPFASLYAVRAHMETHKRDNNLRYECWMCGALYSRAFALRDHMKQQHQDCNSTNNSDHCDKNKVLNVEEEIDAANSILVKEDDIILGLEGTSIEIIENNCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01566450;
90% Identity: -
80% Identity: -