Basic Information

Insect: Stenodera caucasica
Gene Symbol: -
Assembly: GCA_037414795.1
Location: JAZBGZ010000227.1:20453-23833[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.7e-05 0.0016 18.5 0.7 1 23 195 217 195 217 0.95

2 15 0.0012 0.073 13.3 1.2 3 23 225 245 224 245 0.99

3 15 0.0001 0.0062 16.6 0.1 1 23 355 377 355 377 0.98

4 15 0.0051 0.3 11.3 0.2 1 23 383 406 383 406 0.98

5 15 3.4e-07 2e-05 24.5 3.0 1 23 435 457 435 457 0.98

6 15 0.0044 0.26 11.5 0.0 1 23 470 492 470 492 0.94

7 15 0.74 44 4.5 1.1 1 23 498 521 498 521 0.96

8 15 0.058 3.4 8.0 1.9 2 19 529 546 529 547 0.96

9 15 0.00023 0.014 15.5 3.6 1 23 556 578 556 578 0.97

10 15 0.0034 0.2 11.9 0.3 2 23 584 605 583 605 0.96

11 15 8.8e-06 0.00052 20.0 0.4 1 23 613 635 613 635 0.98

12 15 0.0038 0.23 11.7 0.2 3 23 643 663 641 663 0.97

13 15 0.00012 0.0072 16.4 0.3 1 23 669 691 669 692 0.95

14 15 0.035 2.1 8.7 1.5 1 23 706 728 706 728 0.96

15 15 0.0046 0.28 11.5 0.1 1 20 1103 1122 1103 1125 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.7e-05	0.0016	18.5	0.7	1	23	195	217	195	217	0.95
2	15	0.0012	0.073	13.3	1.2	3	23	225	245	224	245	0.99
3	15	0.0001	0.0062	16.6	0.1	1	23	355	377	355	377	0.98
4	15	0.0051	0.3	11.3	0.2	1	23	383	406	383	406	0.98
5	15	3.4e-07	2e-05	24.5	3.0	1	23	435	457	435	457	0.98
6	15	0.0044	0.26	11.5	0.0	1	23	470	492	470	492	0.94
7	15	0.74	44	4.5	1.1	1	23	498	521	498	521	0.96
8	15	0.058	3.4	8.0	1.9	2	19	529	546	529	547	0.96
9	15	0.00023	0.014	15.5	3.6	1	23	556	578	556	578	0.97
10	15	0.0034	0.2	11.9	0.3	2	23	584	605	583	605	0.96
11	15	8.8e-06	0.00052	20.0	0.4	1	23	613	635	613	635	0.98
12	15	0.0038	0.23	11.7	0.2	3	23	643	663	641	663	0.97
13	15	0.00012	0.0072	16.4	0.3	1	23	669	691	669	692	0.95
14	15	0.035	2.1	8.7	1.5	1	23	706	728	706	728	0.96
15	15	0.0046	0.28	11.5	0.1	1	20	1103	1122	1103	1125	0.93

Sequence Information

Coding Sequence: ATGGAAGATAATTTTGCATTAAGTTGGGAAGATTCATCAACAGTTGTACAAGGTGAAGAAGTGATTTGTAGTatagaaaatgaaatattacCAAGTGAATCTGAAGAATTCACTGGTGTTGCTTCTAATGAGcaaacaacaacagcaacagcaACTCAACAAATTGAAGAAGATGTTGAAACAGAAGAAGAAATAGTAATGGGTGATGATCAACAAGTTGTACAAGAAGTTGTTGAAACTGATGAAGTTGTACaagaaaatattgtttatttaacgGATCATAATGTATTAGTTATGGAATCTGGtgatgttaatgataatattaataataatggtgataatgAATGTATAGTTGAAAGTGAAGTTGTACAAACtcaacaaacaaatgataatgattttcaacatgaatttatcgattgtcAAGTAGCTGAAGAAATTGTAACAGAACAATGGGATGAAAGTTGTCCAGAAGAGATTGTTGTTGGTAGTGAAGAAGCTGTTGGTGGTACAGaagaacaaacaaatgaagattTCGATATACCATTACCAACTGATCAAGATGAATATACATCATCAAGACCATATCCATGTGATTTTTGTAGTCGACGTTTTCGTAAAAAAGCCAATTTAATGAATCATATGGTTGCACATCAAACAGATCGCCCACATGGTTGTAATTTATGTGGTGTACGTTATATAAGAAAATGCGATTTAAtgaatcatttaaaaattcatgCCTACATACCAGAAACTGATGGtttagaagaagaagaagcaCAACAATTAGATGAATCTGATCAAGAGAAACGCAGTTCTATGagtagaaaaataaaacaattcggTAAAcgtaataaaaagaaaattaaagatgaatatgataattatgaaGGTGATGAAACTGGTGCATCCAGTTCAAAATCTTATAGTTATGTTGATGAAGATATGCGTTTAATGGAAGCAATGGAGAATAATGTTAAAActgattataatgaatataatGAATATATGACTGATAATCAAACAGTTGAAGAACGTTATCCGATAACAGATCCACGTAAACCATTTGTATGTCAACATTGTGGTGTTGGTTTTGCTAGAGAGAAAGCATTAGCATCACATGCTCGTATACATGGTGGTGATAGTCCATTTGAATGCCAAAAATGTGGTGAAATGTTTTGGGATTTAGCATTAATGCGTGAACATGTACGTACAAAACATGGTggtgatattgatgatttacttgatgataatgaagatgaagaagatgaTGATTATTCAGAAGAAGACACAAAATATGGTACATTTTATTGTTCTGTTTGTGGTTTATCATTTCATCGACAAGATAATTTGAAACGTCATCAACGTGTCCATATAAAAGAGGAATATGTTAATGATCATGAATTTGGACATATTTGTAATGTTTGTGGTGAATCATTCCCTGAAGCATTAGATTTATTAGCGCATGCTGAAATACATGCACGTGGTTCAGAACATCGCTGTATGATATGCGGTGAATTATGTACAGATGATCAATCTGTTGCTATACATGTACAAACGAAACATGGTAAAACTTTACCACCGAATACATGTATGTTGTGTGGACGTACTTGTAAAGATCGGCGTACATTATTGAAACATTCATGGGAACATTCGAAAGAGAAAAGTTTTGCATGTTCAAAATGTGCAAAGACTTTTCATAATAAAGCTAGATTGAAACGACATATGTTGTCACATCGTAATAAAGTTGTATCATGTGATGTGTGTGGTGAAGAATTCCCAGATGGACGCTCATTAATGAATCATCGACATAGTCATAGTAGTTTATCTGGTAGACAATTTCCATGTCGTGAATGTGGCAAAACGTTTGGTTCGCGCAGTTCACAACAAATTCATATAAGAATACATACTGGTGAACGTCCATATGGTTGTCGGTTTTGTTGGAAAGCCTTTGCCGACGGTGGTACATTAAGAAAACATGAACGTATACATACTGGTGAAAAACCATATGCTTGTGCTGTATGTCCACGTGCTTTCAATCAACGTGTTGTATTAAGAGAACATATACGTTCACATCATTCAGGACCTGATCCGAAATATTCACATAGTGTCACACCATATTGTTGTTCAGTATGTTCAGATATGTTTGCCACATCACAAGATTTAATTGTACATTTAATACATCATTGTGATATGAATACAGCTATGAAACGACAACCACAAGTTGGTCCAAGGAAATATAAACGTCGACGAAAATTAAAGCCGCACGAATTAGAAATGATATCGAGTAAAGTTGATGATGAAAtggaagatgatgatgaacaacaacaacatcatcaacaacaacagcaacagcaCCACCATCaacaagaagaagaaaatatttatacagaTTCAGAAGATGATCGTGAAACACGCCGAAAAAGTAataagaaatttaaaaaaaattccccaAAATCAAGTTTAAATGATTcatataatgatttttataatagttGTTCATCAGCtatcgaaaatattaattcaattgttaattcgaaaacaacatcaacatcaacaccaTTAgcatcaaataattcaaaaacaaaacgtaaaataaaaacagaaaCAACAGTACCATCACGTCCGAAAATGATACATACACAAAAAACACGTGTACCAATTGAAACAGGTGAAGATGGTAAAATAcgacataaaacaaaaacattaataaCACGTACACAACCAACtgaattgaaatcatcaattggTGAACGTATAAGGCCACGTACAAAAAATGTTAGTTATCatatattgaataatgaaaaattaccaattgcTACATTCCCAGAAGATGATCAagctgttaataatttattaaaagaagaattgaataatgatcaaaataatagtagtaatggtgatttattaattgaagaacaacaacaaactgaACAAACGCCGGAAGTTGCATCTGagcaaattattgaaagtgatAATGGTGCATTtccaacaaatataattaaagttACATCAACACCAACACAATTACATAATTTACGTCCTGGACGACATTTGATTGTACCTGGTAGTAAAGTTGTACGTTTAGTTAAAGGTGGTATGATtgttacaaaaacaaaagaaaaagaaagacGTAATAATGAACCGGAGAATATTCTACCTGAtgttgaaacaacaacaacaacaacaaatgataataataatgatgagaatAATGATAGAGATATTAGTAAGATTAAACAAGAAATTCTCGATCCAAGTCCATTACATGAACTTGCTGAAATATCAATGCAACATgcacaaaatatttttaaatgtgAAATGTGTAGTGCAGTGTTTTCTGATAGAGGTAAACTATTAGATCATGTGCCCATACATATATGA
Protein Sequence: MEDNFALSWEDSSTVVQGEEVICSIENEILPSESEEFTGVASNEQTTTATATQQIEEDVETEEEIVMGDDQQVVQEVVETDEVVQENIVYLTDHNVLVMESGDVNDNINNNGDNECIVESEVVQTQQTNDNDFQHEFIDCQVAEEIVTEQWDESCPEEIVVGSEEAVGGTEEQTNEDFDIPLPTDQDEYTSSRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYIRKCDLMNHLKIHAYIPETDGLEEEEAQQLDESDQEKRSSMSRKIKQFGKRNKKKIKDEYDNYEGDETGASSSKSYSYVDEDMRLMEAMENNVKTDYNEYNEYMTDNQTVEERYPITDPRKPFVCQHCGVGFAREKALASHARIHGGDSPFECQKCGEMFWDLALMREHVRTKHGGDIDDLLDDNEDEEDDDYSEEDTKYGTFYCSVCGLSFHRQDNLKRHQRVHIKEEYVNDHEFGHICNVCGESFPEALDLLAHAEIHARGSEHRCMICGELCTDDQSVAIHVQTKHGKTLPPNTCMLCGRTCKDRRTLLKHSWEHSKEKSFACSKCAKTFHNKARLKRHMLSHRNKVVSCDVCGEEFPDGRSLMNHRHSHSSLSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSHSVTPYCCSVCSDMFATSQDLIVHLIHHCDMNTAMKRQPQVGPRKYKRRRKLKPHELEMISSKVDDEMEDDDEQQQHHQQQQQQHHHQQEEENIYTDSEDDRETRRKSNKKFKKNSPKSSLNDSYNDFYNSCSSAIENINSIVNSKTTSTSTPLASNNSKTKRKIKTETTVPSRPKMIHTQKTRVPIETGEDGKIRHKTKTLITRTQPTELKSSIGERIRPRTKNVSYHILNNEKLPIATFPEDDQAVNNLLKEELNNDQNNSSNGDLLIEEQQQTEQTPEVASEQIIESDNGAFPTNIIKVTSTPTQLHNLRPGRHLIVPGSKVVRLVKGGMIVTKTKEKERRNNEPENILPDVETTTTTTNDNNNDENNDRDISKIKQEILDPSPLHELAEISMQHAQNIFKCEMCSAVFSDRGKLLDHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00987317;
90% Identity: iTF_01566438;
80% Identity: -