Basic Information

Insect: Stenodera caucasica
Gene Symbol: -
Assembly: GCA_037414795.1
Location: JAZBGZ010000309.1:50885-52548[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.8e-07 2.3e-05 24.3 2.1 3 23 91 111 89 111 0.95

2 14 7.6e-06 0.00045 20.2 2.5 1 23 117 139 117 139 0.98

3 14 0.21 13 6.2 3.9 1 23 145 167 145 167 0.89

4 14 3.9e-07 2.3e-05 24.3 2.0 1 23 173 195 173 195 0.98

5 14 0.00044 0.026 14.7 0.9 1 23 201 223 201 223 0.98

6 14 0.00049 0.029 14.5 3.4 1 23 229 251 229 251 0.98

7 14 6.9e-07 4.1e-05 23.5 0.1 1 23 259 281 259 281 0.97

8 14 0.013 0.77 10.1 2.4 2 23 288 309 287 309 0.95

9 14 0.00011 0.0064 16.6 2.8 1 23 323 345 323 345 0.97

10 14 0.00062 0.037 14.2 1.9 1 23 353 375 353 375 0.97

11 14 0.00015 0.009 16.1 0.2 1 23 381 403 381 403 0.97

12 14 9.8e-06 0.00058 19.9 2.8 1 23 409 432 409 432 0.97

13 14 4.9e-05 0.0029 17.7 0.6 1 23 439 461 439 461 0.98

14 14 0.046 2.7 8.3 3.1 1 22 467 488 467 490 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.8e-07	2.3e-05	24.3	2.1	3	23	91	111	89	111	0.95
2	14	7.6e-06	0.00045	20.2	2.5	1	23	117	139	117	139	0.98
3	14	0.21	13	6.2	3.9	1	23	145	167	145	167	0.89
4	14	3.9e-07	2.3e-05	24.3	2.0	1	23	173	195	173	195	0.98
5	14	0.00044	0.026	14.7	0.9	1	23	201	223	201	223	0.98
6	14	0.00049	0.029	14.5	3.4	1	23	229	251	229	251	0.98
7	14	6.9e-07	4.1e-05	23.5	0.1	1	23	259	281	259	281	0.97
8	14	0.013	0.77	10.1	2.4	2	23	288	309	287	309	0.95
9	14	0.00011	0.0064	16.6	2.8	1	23	323	345	323	345	0.97
10	14	0.00062	0.037	14.2	1.9	1	23	353	375	353	375	0.97
11	14	0.00015	0.009	16.1	0.2	1	23	381	403	381	403	0.97
12	14	9.8e-06	0.00058	19.9	2.8	1	23	409	432	409	432	0.97
13	14	4.9e-05	0.0029	17.7	0.6	1	23	439	461	439	461	0.98
14	14	0.046	2.7	8.3	3.1	1	22	467	488	467	490	0.84

Sequence Information

Coding Sequence: atGTTTACaaatgatgatgatgaaatcgATACAAAAGACGCTCTCGAAAATCTAAACGtctcattatcatcattgattAATGATGTTGACGCTGATAATaacgacgatgatgatgaagatgatagtgatgatgatgatgatagtggtgatgatgatgatgatgatgataagaaaaaacaattcgaaacTGAAGATCCGCTAAAAATTGaaacagatcatgattattatcagaaacgtaaattaacaaatgatggTGAGAAATTATTAGCATGTCATTTATGTAATAAAACGTTCATacgtaaatataatttacGTCGTCATATAATTTTACATAATACAGAAAATTCgtacaattgtaatttatgtaataaacaatttacaacacgtaaattattacaattacattTGATGCGTCATCGTGGTGAGAAACCgttcaattgtaatatttgcAATAAGAGTTTTCTATGTCGTCGTTATTTAGATACGCATTTACGTTTACATAATAACGATCGACAATTCAAATGTAATTTGTGCAATAAGGGCTTTACGTTACGtagtaatttaaaaaaacataTAATCCGTCATAATAATAAGGAAATATATAAATGTGAATTATGTAATAAGGGTTTTCTATATAAGGAAACTTTAAATACACATTTATCGATACATAGCGGTGAGAAACCATATAAATgtgattattgtaataaagGTTTCTTTCATATATTAAGTTTAAAAACACATTTACAATTGCACgatatcaataatgataataaatttatatgtgATTATTGTGGTAAAATATTCGAACAAAATTACGAATTAGAACAGCATCTATTGATACATGCTGATAAAATATCATTGACATGTAAAGAATGTTATAGTTGTTTTAAAGATAAACCAACTTTAGATCAACATTTAGAACAACATGctttagaaaaacaacaattacaacaacacaaacaacaatatcaatgtGAATTGTGTCAGAAagatttcaaaacaaaacgTTCATTACATGTACATTCTTTAATACATAAAGACGACAATGATAAACCGTATGaatgtaattattgtaaaaagaAATTCTTGTATAAGATTAGtttagaaaatcatatatCACAACATACCGGTAATCGTCCTtatatttgtgattattgtggtAAATCATttgctataattaattatttccaagAACATTTATTAGTTCATACAAATGATAAACCATATATATGTAATGTgtgtaatttgaaatttaaatatcgTGCTAGTTTGAATCGACATCgtagaaaatttcataataatgatgagaataattttgtttgtgaTTTATGTGGTAAatcttttatattgaaatcgaTATTAAATACGCATTTAAAGAAACATAATGGCTGGAAACCGTTTCAATGTAATTTGTGTAATAAAGGATTTACTAAAGAAATTTATCTGCGATGTCATAAAGttaaaatacataataaagtctag
Protein Sequence: MFTNDDDEIDTKDALENLNVSLSSLINDVDADNNDDDDEDDSDDDDDSGDDDDDDDKKKQFETEDPLKIETDHDYYQKRKLTNDGEKLLACHLCNKTFIRKYNLRRHIILHNTENSYNCNLCNKQFTTRKLLQLHLMRHRGEKPFNCNICNKSFLCRRYLDTHLRLHNNDRQFKCNLCNKGFTLRSNLKKHIIRHNNKEIYKCELCNKGFLYKETLNTHLSIHSGEKPYKCDYCNKGFFHILSLKTHLQLHDINNDNKFICDYCGKIFEQNYELEQHLLIHADKISLTCKECYSCFKDKPTLDQHLEQHALEKQQLQQHKQQYQCELCQKDFKTKRSLHVHSLIHKDDNDKPYECNYCKKKFLYKISLENHISQHTGNRPYICDYCGKSFAIINYFQEHLLVHTNDKPYICNVCNLKFKYRASLNRHRRKFHNNDENNFVCDLCGKSFILKSILNTHLKKHNGWKPFQCNLCNKGFTKEIYLRCHKVKIHNKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -