Basic Information

Insect: Stenodera caucasica
Gene Symbol: -
Assembly: GCA_037414795.1
Location: JAZBGZ010000182.1:10072-11697[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.84 50 4.4 0.6 1 17 53 69 53 70 0.89

2 13 0.00052 0.031 14.4 0.3 1 23 143 165 143 165 0.94

3 13 0.00048 0.028 14.6 1.1 2 23 172 193 172 193 0.98

4 13 1.4e-06 8.1e-05 22.6 3.3 1 23 199 221 199 221 0.98

5 13 0.00011 0.0066 16.6 0.4 3 23 229 249 227 249 0.96

6 13 1.9e-05 0.0011 19.0 2.7 2 23 256 277 255 277 0.97

7 13 2.3e-05 0.0014 18.7 4.5 1 23 283 305 283 305 0.97

8 13 2.8e-06 0.00017 21.6 2.1 1 23 311 333 311 333 0.96

9 13 1e-05 0.00059 19.8 0.4 1 23 339 361 339 361 0.99

10 13 2.7e-07 1.6e-05 24.8 0.4 1 23 367 389 367 389 0.98

11 13 5.8e-07 3.4e-05 23.7 4.2 1 23 395 417 395 417 0.99

12 13 1e-07 6.1e-06 26.1 0.2 1 23 423 445 423 445 0.96

13 13 1.1e-06 6.7e-05 22.8 0.8 1 23 451 473 451 473 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.84	50	4.4	0.6	1	17	53	69	53	70	0.89
2	13	0.00052	0.031	14.4	0.3	1	23	143	165	143	165	0.94
3	13	0.00048	0.028	14.6	1.1	2	23	172	193	172	193	0.98
4	13	1.4e-06	8.1e-05	22.6	3.3	1	23	199	221	199	221	0.98
5	13	0.00011	0.0066	16.6	0.4	3	23	229	249	227	249	0.96
6	13	1.9e-05	0.0011	19.0	2.7	2	23	256	277	255	277	0.97
7	13	2.3e-05	0.0014	18.7	4.5	1	23	283	305	283	305	0.97
8	13	2.8e-06	0.00017	21.6	2.1	1	23	311	333	311	333	0.96
9	13	1e-05	0.00059	19.8	0.4	1	23	339	361	339	361	0.99
10	13	2.7e-07	1.6e-05	24.8	0.4	1	23	367	389	367	389	0.98
11	13	5.8e-07	3.4e-05	23.7	4.2	1	23	395	417	395	417	0.99
12	13	1e-07	6.1e-06	26.1	0.2	1	23	423	445	423	445	0.96
13	13	1.1e-06	6.7e-05	22.8	0.8	1	23	451	473	451	473	0.99

Sequence Information

Coding Sequence: atgaataatttgcTGTTAAATAACTTCGATAAATTATGTAGAGCTTGTATGTCGGACGAAGATGACGATATGGTGTCAATATTAGATCCGATTTTGAAAGAAATGTTCATATCCTGTACATCATTAGAAGTAAATATAGACGATAAACTACCGAAATTCATATGCAATAAATgcagaaaacaattgaatgatgccaacaatttcaaaagtaTTTGCTTAAAATCGAATACTCTTCTACAACAACACTTaacaaatttagaattagTTGATGATATGGagtttaatttgaatgatttattgaaaataaattttccagaaaactGTGATGTCACAAAGAATGATTGTACACAAAATCCGACAAACGTTGAAGATAATTCAGatataatcgaaaaacaagATGTGACAAATAAACCAAAGAATTCATCATATCGATGTAATAAATGTAATGAAAGTTTCAGTTTAGATGAAGATTTAAAATTGCATGAAATAGCCCATCCTGTTGATAACACACCGAAATGTACCATATGCgataaattgttcaataatttgaagattttgcGACGCCATGTTCGCATCCATATGAAATCGAAGCCATTTTGTTGTAATCTATGTCCGAAGACATTTTCCGAATCTGGCAGTTTAACGAGACATTTACGTAAACATCGCGGCGAAAAACGACATTTATGTACTGTTTGTGGTAAAGGTTTCTATGAAGCGAATGTTTTATTGATACATATGCGTACACATACCGGCGAAAAACCGATCAAATGTGATACTTGCAATAAATGCTTTTCAGATCCGAACGGTTATCGGAGCCATCTAAAATCGCATACTGGTGAACGGAAATTTATATGCAACATATgtaaaaaatcattttcacATTCGTTTGTTTTAAAGAAACATTTTCGTGTACATAGTGGAGAACGGCCATATTTATGTAatgtttgtggaaaatcatTCACTCAAAGTCATTATGTATCGATTCATATGAGACAACATACGGGTGAATTACCGTATACTTGTTCCGTTTGCAATAAAGGATTCGCCCAAAATCGTCAAATGGTGATGCATTTGAGGATACACACCGGATATAAACCGTTCATATGCAATGTATGCGGCAAATCCTGTGCTAGATCTGGTGATTTAGTGATACATATGCGTTCGCACACCGGCGAGAAACCATTTACTTGTACGATTTGTATGAAATCGTACACGACATCCAGTCATTTAAAAGTACACATGCGAACGCATAACGGTGAACGAAAGTATTTATGTACGTATTGCGGTAAAAGTTTTATTGATAGTCAAGGCTTAAAGGCGCATATTCGAGTACATACAGGTGAAAAACCGTACGTTTGTAATCAATGTGGACATAGTTTTGCTCAATCGGGTGCATTGGCTACACATCGTAAAACTCATTTACCgaaaaaaattgccaattGA
Protein Sequence: MNNLLLNNFDKLCRACMSDEDDDMVSILDPILKEMFISCTSLEVNIDDKLPKFICNKCRKQLNDANNFKSICLKSNTLLQQHLTNLELVDDMEFNLNDLLKINFPENCDVTKNDCTQNPTNVEDNSDIIEKQDVTNKPKNSSYRCNKCNESFSLDEDLKLHEIAHPVDNTPKCTICDKLFNNLKILRRHVRIHMKSKPFCCNLCPKTFSESGSLTRHLRKHRGEKRHLCTVCGKGFYEANVLLIHMRTHTGEKPIKCDTCNKCFSDPNGYRSHLKSHTGERKFICNICKKSFSHSFVLKKHFRVHSGERPYLCNVCGKSFTQSHYVSIHMRQHTGELPYTCSVCNKGFAQNRQMVMHLRIHTGYKPFICNVCGKSCARSGDLVIHMRSHTGEKPFTCTICMKSYTTSSHLKVHMRTHNGERKYLCTYCGKSFIDSQGLKAHIRVHTGEKPYVCNQCGHSFAQSGALATHRKTHLPKKIAN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01022404; iTF_00929765; iTF_01566421;
90% Identity: -
80% Identity: -