Scau003747.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- -
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010000312.1:11830-14518[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00045 0.027 14.6 0.4 2 23 155 176 154 176 0.96 2 15 1.9e-05 0.0011 19.0 1.9 2 23 182 203 181 203 0.96 3 15 6.7e-05 0.004 17.2 4.8 1 23 209 231 209 231 0.97 4 15 0.00027 0.016 15.3 0.7 1 20 237 256 237 258 0.94 5 15 0.00026 0.015 15.4 0.2 1 23 265 287 265 287 0.97 6 15 2e-06 0.00012 22.0 1.8 1 23 432 454 432 454 0.98 7 15 4.2e-07 2.5e-05 24.2 2.6 1 23 460 482 460 482 0.98 8 15 0.00038 0.022 14.9 3.5 1 23 487 510 487 510 0.96 9 15 0.0018 0.11 12.8 2.5 1 23 522 544 522 544 0.92 10 15 0.00029 0.017 15.2 8.4 1 23 550 572 550 572 0.98 11 15 1.4e-06 8.2e-05 22.5 0.5 1 23 579 601 579 601 0.96 12 15 1.8e-06 0.00011 22.2 1.2 1 23 607 629 607 629 0.98 13 15 2.6e-07 1.6e-05 24.8 0.9 3 23 637 657 635 657 0.96 14 15 3.9e-06 0.00023 21.1 0.1 1 23 663 685 663 685 0.99 15 15 0.036 2.1 8.7 0.7 1 23 690 713 690 713 0.97
Sequence Information
- Coding Sequence
- atggaaataataaaaattgatttagaaCGTACATGTCGTACTTGCAAACAACAAAATGACGATATGGTGTCATTGTTTGAATTGAGCGATAATGAATATCCCCGTATTGACGAGATGCTAATGGCTTGTACTGCATTACAAattAAGAACGATGATGGTATGCCAGCTTTAATTTGTAagaattgtttagaaaaattgaaagatgcATTTATATTCAAGAAACAATGTAAAGAAGTTGAGAatagtttgaaaaaatatctacgtcatatcaatattgaatcatttGATGGTGAAATTCCAGATGAGATTGATATTCATGATATCAAAAAAGAGTTGCATGAAGTTGTTCATTCTTTACCTGattcaTCAGCTGATCCGCTTAGTAAAGAAGGGAAAGAATCTGAAGAACTCTCATCACAATTTGATTACATACGTTTTATAAATGATACAAGTATGATATTAATATGTCGTGAATGTTATAAAGTATTCACAACATTAGATGGTTTAAGAGGCCATAAACGTTTACATTTAGGTAATTTATTGAGATGTAAATATTGTGGTAAAGGTTATACTAGACAAACACATGTTGAACGACATGAAGCAACCCATAAAATCCAAAAAGTACACATATGTAAAATATGTAATAAAACTTTAACAAGAATTGATCATCTAAAACGACATCTAACAACTCATTTGAAAGAGAAACCTTTTTCATGTAAAATATGTAATAGAGGCTTTAATCGTTCAGACCATTTAGATTTACATACAGTACGTTGTAAAGGTGATCGcttatttatttgtgatatATGTAATAGAGGCTTTGCACGCGAAGATAGTATGGAAGTacataaaaaattacatgaaaaTCAACAACCAATCTTACCAACATTagataatatcgataatatatCGGACTATTATTACGAAATTGATCGTGATCCTGAATCACAAGATACACTAATGTATTCAGATTGTGATGATTATTTCGAACCTTTTGTTGAAGTTGacgaaaataatataaagaatTGTAAAGagaatgatgaaaatgatatatttgaagatatcaaaattacaataacaaatgaGCCAAATGAATTGAATGATGTAACACAATCAGAAGAgattattgttgagaaaaaagAAAGTAATGACTCTGATGGTGAAATAATGGACGATTTAGATAATGATATGCAATCGGAAGGTGATTCGGATTATTCGCCTCAGAAAGTTACACCTAGAAAACGTGGTCGTCCAAGAAAATATCCACCAGGACGACGTCGACGACAAAAATCCTATACTTgtgatatttgtaataaaacatttacacgtttaaatttatacaatCGACACGTAAATTCGCATTCAGGAATAAAACCATACCAATGTGATATATGTAATCGGTCATTTACACGTAGTGATCATTTAGCTCAACATACAAAACTACACGACAACCAAGAATATGAATGtgaattttgtcaaaaaaccTTCTGTAAAATTGATCAACTTGAGAAACATAAAGCAATGAAACATACGTTCGGCGAAAAGgTGATTGGAGAGAAGAAATTCGAATGCcatatttgtaaaaaaacaTTCACAACAGAAAAATATCGAGATATTCATGTTAATGGTCATTTAGGCGATAAACGTTTCAAATGTAAAACTTGCGATAAATGTTTCTTATCAAAATCGCATTTAAATGAACATATGAAATTCCATAATGAgaattcaaagaaatttttATGTTCAGAATGTGGACAAAGATTTATACGTAATGATTATTTAGTTATACATATGAGACGACATCGTGGCGAAAAACCATTCAAATGTAAATATTGCGGCAAAGgTTTTCCGCGTACTACTGATTTAACAGTACATGAACGTTACCATACAGGCGAAAAAACGCATCTTTGTACGATTTGCGGTCGTGGTTTTGGACGtgCATATAATTTAACGGTCCATATGCGGACACATACCGGTGAGAAACCATATCAATGCACTTATTGTGATGCAGCCTTCGCACAAGGTAATGATTTAAAAGCGCATATTCGTCGTCATACTGGGGAACGTTTCCAATGTGAATTATGTACAGAAAGTTTTTTGATGGGTTATCTTTTAACGCAACATAAACGAACAGTTCATGgTTTGAATGTTGTGAGCAATATCCGCCGATTACAGCCGattcataaaattaaacaagatGTAGATGATGAACCACCAATTACAATACCATTACCAAAGCCAGTTATACCtgaaattgttctatttcCACAATTACATCAACGTTTAACGAGAGAATAA
- Protein Sequence
- MEIIKIDLERTCRTCKQQNDDMVSLFELSDNEYPRIDEMLMACTALQIKNDDGMPALICKNCLEKLKDAFIFKKQCKEVENSLKKYLRHINIESFDGEIPDEIDIHDIKKELHEVVHSLPDSSADPLSKEGKESEELSSQFDYIRFINDTSMILICRECYKVFTTLDGLRGHKRLHLGNLLRCKYCGKGYTRQTHVERHEATHKIQKVHICKICNKTLTRIDHLKRHLTTHLKEKPFSCKICNRGFNRSDHLDLHTVRCKGDRLFICDICNRGFAREDSMEVHKKLHENQQPILPTLDNIDNISDYYYEIDRDPESQDTLMYSDCDDYFEPFVEVDENNIKNCKENDENDIFEDIKITITNEPNELNDVTQSEEIIVEKKESNDSDGEIMDDLDNDMQSEGDSDYSPQKVTPRKRGRPRKYPPGRRRRQKSYTCDICNKTFTRLNLYNRHVNSHSGIKPYQCDICNRSFTRSDHLAQHTKLHDNQEYECEFCQKTFCKIDQLEKHKAMKHTFGEKVIGEKKFECHICKKTFTTEKYRDIHVNGHLGDKRFKCKTCDKCFLSKSHLNEHMKFHNENSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYQCTYCDAAFAQGNDLKAHIRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQPIHKIKQDVDDEPPITIPLPKPVIPEIVLFPQLHQRLTRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -